Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002769A_C01 KMC002769A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB63608.1| unknown protein [Arabidopsis thaliana] gi|2645099... 128 3e-43
ref|NP_194147.1| putative protein; protein id: At4g24160.1 [Arab... 128 3e-43
gb|AAH03982.1| Similar to hypothetical protein FLJ12816 [Mus mus... 38 0.14
dbj|BAC26863.1| unnamed protein product [Mus musculus] 38 0.14
ref|NP_598837.1| RIKEN cDNA 1110035H23 [Mus musculus] gi|1702843... 38 0.14
>gb|AAB63608.1| unknown protein [Arabidopsis thaliana] gi|26450991|dbj|BAC42602.1|
unknown protein [Arabidopsis thaliana]
Length = 418
Score = 128 bits (321), Expect(2) = 3e-43
Identities = 65/91 (71%), Positives = 72/91 (78%), Gaps = 3/91 (3%)
Frame = -3
Query: 662 RYTSARF---STGEMLTESESTLLTDYLYHTPAA*PSGELCLNYIFSFGAFTQLPLLLSA 492
RYT+ARF S G LTE E+ LLTDY+YHT AA SGELCL YIFSFGAF + PLL SA
Sbjct: 277 RYTTARFGAHSEGTGLTEEEAKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLQSA 336
Query: 491 SDWKVPTTFIYGVQTWMNYEGAREARKHMKV 399
S+WKVPTTFIYG+ WMNY+GA EARK MKV
Sbjct: 337 SEWKVPTTFIYGMNDWMNYQGAVEARKSMKV 367
Score = 69.3 bits (168), Expect(2) = 3e-43
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -1
Query: 403 KLPCEIIRVPQPGPFLFIENPSGFHSAVFHACRRFLSPDPDHE 275
K+PCEIIRVPQ G F+FI+NP GFHSAV +ACR+F+S D H+
Sbjct: 366 KVPCEIIRVPQGGHFVFIDNPIGFHSAVLYACRKFISQDSSHD 408
>ref|NP_194147.1| putative protein; protein id: At4g24160.1 [Arabidopsis thaliana]
gi|7446839|pir||T13464 hypothetical protein T19F6.150 -
Arabidopsis thaliana gi|5668644|emb|CAB51659.1| putative
protein [Arabidopsis thaliana]
gi|7269266|emb|CAB79326.1| putative protein [Arabidopsis
thaliana]
Length = 407
Score = 128 bits (321), Expect(2) = 3e-43
Identities = 65/91 (71%), Positives = 72/91 (78%), Gaps = 3/91 (3%)
Frame = -3
Query: 662 RYTSARF---STGEMLTESESTLLTDYLYHTPAA*PSGELCLNYIFSFGAFTQLPLLLSA 492
RYT+ARF S G LTE E+ LLTDY+YHT AA SGELCL YIFSFGAF + PLL SA
Sbjct: 266 RYTTARFGAHSEGTGLTEEEAKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLQSA 325
Query: 491 SDWKVPTTFIYGVQTWMNYEGAREARKHMKV 399
S+WKVPTTFIYG+ WMNY+GA EARK MKV
Sbjct: 326 SEWKVPTTFIYGMNDWMNYQGAVEARKSMKV 356
Score = 69.3 bits (168), Expect(2) = 3e-43
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -1
Query: 403 KLPCEIIRVPQPGPFLFIENPSGFHSAVFHACRRFLSPDPDHE 275
K+PCEIIRVPQ G F+FI+NP GFHSAV +ACR+F+S D H+
Sbjct: 355 KVPCEIIRVPQGGHFVFIDNPIGFHSAVLYACRKFISQDSSHD 397
>gb|AAH03982.1| Similar to hypothetical protein FLJ12816 [Mus musculus]
Length = 243
Score = 37.7 bits (86), Expect = 0.14
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 614 ESTLLTDYLYHTPAA*PSGELCLNYIFSFGAFTQLPLL--LSASDWKVPTTFIYGVQTWM 441
E +++Y+YH A PSGE + + + P+L + VP T IYG TW+
Sbjct: 135 EDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWI 194
Query: 440 NYEGAREAR 414
+ ++ +
Sbjct: 195 DTSTGKKVK 203
>dbj|BAC26863.1| unnamed protein product [Mus musculus]
Length = 318
Score = 37.7 bits (86), Expect = 0.14
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 614 ESTLLTDYLYHTPAA*PSGELCLNYIFSFGAFTQLPLL--LSASDWKVPTTFIYGVQTWM 441
E +++Y+YH A PSGE + + + P+L + VP T IYG TW+
Sbjct: 210 EDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWI 269
Query: 440 NYEGAREAR 414
+ ++ +
Sbjct: 270 DTSTGKKVK 278
>ref|NP_598837.1| RIKEN cDNA 1110035H23 [Mus musculus] gi|17028430|gb|AAH17532.1|
Similar to hypothetical protein FLJ12816 [Mus musculus]
gi|26340096|dbj|BAC33711.1| unnamed protein product [Mus
musculus]
Length = 342
Score = 37.7 bits (86), Expect = 0.14
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 614 ESTLLTDYLYHTPAA*PSGELCLNYIFSFGAFTQLPLL--LSASDWKVPTTFIYGVQTWM 441
E +++Y+YH A PSGE + + + P+L + VP T IYG TW+
Sbjct: 234 EDDTISEYIYHCNAQNPSGETAFKAMMESFGWARRPMLERIHLIRKDVPITMIYGANTWI 293
Query: 440 NYEGAREAR 414
+ ++ +
Sbjct: 294 DTSTGKKVK 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,608,386
Number of Sequences: 1393205
Number of extensions: 12870086
Number of successful extensions: 24673
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24661
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
