Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002767A_C01 KMC002767A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196878.2| transporter-like protein; protein id: At5g13740... 35 1.1
gb|AAM12978.1| transporter-like protein [Arabidopsis thaliana] g... 35 1.1
gb|AAM63809.1| transporter-like protein [Arabidopsis thaliana] 34 1.4
ref|NP_510830.2| Sugar transporter (53.5 kD) [Caenorhabditis ele... 34 1.4
ref|NP_568290.2| transporter-like protein; This gene structure i... 34 1.4
>ref|NP_196878.2| transporter-like protein; protein id: At5g13740.1, supported by
cDNA: gi_20260159 [Arabidopsis thaliana]
Length = 486
Score = 34.7 bits (78), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 503 GTHMVFFILNVVAGYGLLLMCTPFLRVKKK 414
G+HMVFF+LNV+ G+ L PFL ++
Sbjct: 457 GSHMVFFVLNVIVVVGVALTFKPFLTTSRR 486
>gb|AAM12978.1| transporter-like protein [Arabidopsis thaliana]
gi|22136244|gb|AAM91200.1| transporter-like protein
[Arabidopsis thaliana]
Length = 460
Score = 34.7 bits (78), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 503 GTHMVFFILNVVAGYGLLLMCTPFLRVKKK 414
G+HMVFF+LNV+ G+ L PFL ++
Sbjct: 431 GSHMVFFVLNVIVVVGVALTFKPFLTTSRR 460
>gb|AAM63809.1| transporter-like protein [Arabidopsis thaliana]
Length = 392
Score = 34.3 bits (77), Expect = 1.4
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -2
Query: 503 GTHMVFFILNVVAGYGLLLMCTPFL 429
GT MVFFILNVV G++L PFL
Sbjct: 363 GTQMVFFILNVVLALGVVLTFKPFL 387
>ref|NP_510830.2| Sugar transporter (53.5 kD) [Caenorhabditis elegans]
gi|21629452|gb|AAM69081.1|U58737_1 Hypothetical protein
ZK54.1 [Caenorhabditis elegans]
Length = 479
Score = 34.3 bits (77), Expect = 1.4
Identities = 18/42 (42%), Positives = 29/42 (68%), Gaps = 3/42 (7%)
Frame = -1
Query: 240 FDSSFV---SCVLRFIGFNLYMCLIFTT*NFPIVVLFHSMSI 124
+D+ FV +C L FIG ++++ L+ TT N ++VLF S+SI
Sbjct: 341 YDTLFVRKMACALGFIGQSVFLFLVMTTSNSLLLVLFFSISI 382
>ref|NP_568290.2| transporter-like protein; This gene structure is inaccurate, likely
due to discrepancies within overlapping bac sequences.
This will be resolved asap. In the meantime, an either
full or partial translation is provided. [Arabidopsis
thaliana] gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2
[Arabidopsis thaliana] gi|17065582|gb|AAL32945.1|
transporter-like protein [Arabidopsis thaliana]
gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2
[Arabidopsis thaliana]
Length = 478
Score = 34.3 bits (77), Expect = 1.4
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -2
Query: 503 GTHMVFFILNVVAGYGLLLMCTPFL 429
GT MVFFILNVV G++L PFL
Sbjct: 449 GTQMVFFILNVVLALGVVLTFKPFL 473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,055,963
Number of Sequences: 1393205
Number of extensions: 11424448
Number of successful extensions: 23104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23104
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
