Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002758A_C01 KMC002758A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00046480.1| hypothetical protein [Lactobacillus gasseri] 31 3.9
pir||S15484 hypothetical protein - rat gi|57516|emb|CAA42524.1| ... 30 6.7
>ref|ZP_00046480.1| hypothetical protein [Lactobacillus gasseri]
Length = 844
Score = 30.8 bits (68), Expect = 3.9
Identities = 11/32 (34%), Positives = 16/32 (49%)
Frame = +3
Query: 345 HFYSLPIPQSSLGNKKRWGCANFKEMQNALSP 440
H Y + +P S G + WGC ++E L P
Sbjct: 241 HSYQVALPDFSAGAMENWGCVTYREAYLLLDP 272
>pir||S15484 hypothetical protein - rat gi|57516|emb|CAA42524.1| ORF [Rattus
rattus]
Length = 158
Score = 30.0 bits (66), Expect = 6.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 418 SLKFAHPHLFLFPRDDCGMGKE*KWC 341
SL+ H H L PRD CG G + WC
Sbjct: 96 SLQTHHSHEALRPRDWCGKGPQWTWC 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,454,944
Number of Sequences: 1393205
Number of extensions: 8129524
Number of successful extensions: 14820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14819
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
