Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002752A_C01 KMC002752A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565886.1| putative AMP deaminase; protein id: At2g38280.1... 77 3e-13
pir||T01259 AMP deaminase homolog F16M14.21 - Arabidopsis thaliana 52 7e-06
ref|NP_494974.1| AMP deaminase [Caenorhabditis elegans] gi|74970... 35 1.2
ref|NP_494973.1| AMP deaminase [Caenorhabditis elegans] 35 1.2
gb|AAO21475.1| Hypothetical protein C34F11.3b [Caenorhabditis el... 35 1.2
>ref|NP_565886.1| putative AMP deaminase; protein id: At2g38280.1, supported by cDNA:
gi_15810524 [Arabidopsis thaliana]
gi|15810525|gb|AAL07150.1| putative AMP deaminase
[Arabidopsis thaliana] gi|20196986|gb|AAC27176.2|
putative AMP deaminase [Arabidopsis thaliana]
gi|22136884|gb|AAM91786.1| putative AMP deaminase
[Arabidopsis thaliana]
Length = 839
Score = 76.6 bits (187), Expect = 3e-13
Identities = 32/40 (80%), Positives = 38/40 (95%)
Frame = -2
Query: 664 DGNDIHKTNVPHIRLEFRETIWREEMRQVYLGKPIIPDEI 545
DGNDIHKTNVPHIR+EFR+TIW+EEM+QVYLGK +I DE+
Sbjct: 798 DGNDIHKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEV 837
>pir||T01259 AMP deaminase homolog F16M14.21 - Arabidopsis thaliana
Length = 600
Score = 52.0 bits (123), Expect = 7e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -2
Query: 664 DGNDIHKTNVPHIRLEFRETIWRE 593
DGNDIHKTNVPHIR+EFR+T+W E
Sbjct: 565 DGNDIHKTNVPHIRVEFRDTVWNE 588
>ref|NP_494974.1| AMP deaminase [Caenorhabditis elegans] gi|7497030|pir||T15771
hypothetical protein C34F11.3 - Caenorhabditis elegans
Length = 865
Score = 34.7 bits (78), Expect = 1.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 661 GNDIHKTNVPHIRLEFRETIWREEMRQVY 575
GNDIH+TNVP IR+ FR +E+ ++
Sbjct: 829 GNDIHRTNVPDIRVSFRHEALVDELYNLF 857
>ref|NP_494973.1| AMP deaminase [Caenorhabditis elegans]
Length = 889
Score = 34.7 bits (78), Expect = 1.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 661 GNDIHKTNVPHIRLEFRETIWREEMRQVY 575
GNDIH+TNVP IR+ FR +E+ ++
Sbjct: 853 GNDIHRTNVPDIRVSFRHEALVDELYNLF 881
>gb|AAO21475.1| Hypothetical protein C34F11.3b [Caenorhabditis elegans]
Length = 764
Score = 34.7 bits (78), Expect = 1.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 661 GNDIHKTNVPHIRLEFRETIWREEMRQVY 575
GNDIH+TNVP IR+ FR +E+ ++
Sbjct: 728 GNDIHRTNVPDIRVSFRHEALVDELYNLF 756
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,971,000
Number of Sequences: 1393205
Number of extensions: 10202436
Number of successful extensions: 19301
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19299
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
