Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002743A_C01 KMC002743A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO64153.1| unknown protein [Arabidopsis thaliana] 196 1e-49
ref|NP_198009.1| putative protein; protein id: At5g26570.1 [Arab... 196 2e-49
pir||T01857 hypothetical protein F9D12.1 - Arabidopsis thaliana ... 196 2e-49
gb|AAK11735.1| starch associated protein R1 [Solanum tuberosum] 60 2e-08
pir||T07050 hypothetical protein R1 - potato gi|3287270|emb|CAA7... 60 2e-08
>gb|AAO64153.1| unknown protein [Arabidopsis thaliana]
Length = 632
Score = 196 bits (499), Expect = 1e-49
Identities = 97/122 (79%), Positives = 107/122 (87%)
Frame = -2
Query: 600 DSNTVEAEIACGLGETLASGTRGTPWRISSGKFDGVVQTLAFANLSEELLVRGAGPADGE 421
DSN VEAEIA GLGETLASGTRGTPWR++SGK DGVVQTLAFAN SEELLV G GPADG+
Sbjct: 510 DSNLVEAEIAPGLGETLASGTRGTPWRLASGKLDGVVQTLAFANFSEELLVSGTGPADGK 569
Query: 420 VIRLTVDYSQKPLTVDPVFRRPLGQRLCAVGFFLERKFGSPPDVEGCLVGKDIYIVQTRP 241
+RLTVDYS+K LTVD VFR+ LGQRL +VGFFLER FG DVEGCLVG+D+YIVQ+RP
Sbjct: 570 YVRLTVDYSKKRLTVDSVFRQQLGQRLGSVGFFLERNFGCAQDVEGCLVGEDVYIVQSRP 629
Query: 240 QP 235
QP
Sbjct: 630 QP 631
>ref|NP_198009.1| putative protein; protein id: At5g26570.1 [Arabidopsis thaliana]
Length = 1186
Score = 196 bits (498), Expect = 2e-49
Identities = 96/122 (78%), Positives = 107/122 (87%)
Frame = -2
Query: 600 DSNTVEAEIACGLGETLASGTRGTPWRISSGKFDGVVQTLAFANLSEELLVRGAGPADGE 421
DSN VEAEIA GLGETLASGTRGTPWR++SGK DG+VQTLAFAN SEELLV G GPADG+
Sbjct: 1064 DSNLVEAEIAPGLGETLASGTRGTPWRLASGKLDGIVQTLAFANFSEELLVSGTGPADGK 1123
Query: 420 VIRLTVDYSQKPLTVDPVFRRPLGQRLCAVGFFLERKFGSPPDVEGCLVGKDIYIVQTRP 241
+RLTVDYS+K LTVD VFR+ LGQRL +VGFFLER FG DVEGCLVG+D+YIVQ+RP
Sbjct: 1124 YVRLTVDYSKKRLTVDSVFRQQLGQRLGSVGFFLERNFGCAQDVEGCLVGEDVYIVQSRP 1183
Query: 240 QP 235
QP
Sbjct: 1184 QP 1185
>pir||T01857 hypothetical protein F9D12.1 - Arabidopsis thaliana
gi|3319357|gb|AAC26246.1| contains similarity to
phosphoenolpyruvate synthase (ppsA) (GB:AE001056)
[Arabidopsis thaliana]
Length = 662
Score = 196 bits (498), Expect = 2e-49
Identities = 96/122 (78%), Positives = 107/122 (87%)
Frame = -2
Query: 600 DSNTVEAEIACGLGETLASGTRGTPWRISSGKFDGVVQTLAFANLSEELLVRGAGPADGE 421
DSN VEAEIA GLGETLASGTRGTPWR++SGK DG+VQTLAFAN SEELLV G GPADG+
Sbjct: 540 DSNLVEAEIAPGLGETLASGTRGTPWRLASGKLDGIVQTLAFANFSEELLVSGTGPADGK 599
Query: 420 VIRLTVDYSQKPLTVDPVFRRPLGQRLCAVGFFLERKFGSPPDVEGCLVGKDIYIVQTRP 241
+RLTVDYS+K LTVD VFR+ LGQRL +VGFFLER FG DVEGCLVG+D+YIVQ+RP
Sbjct: 600 YVRLTVDYSKKRLTVDSVFRQQLGQRLGSVGFFLERNFGCAQDVEGCLVGEDVYIVQSRP 659
Query: 240 QP 235
QP
Sbjct: 660 QP 661
>gb|AAK11735.1| starch associated protein R1 [Solanum tuberosum]
Length = 1464
Score = 60.1 bits (144), Expect = 2e-08
Identities = 44/144 (30%), Positives = 62/144 (42%), Gaps = 23/144 (15%)
Frame = -2
Query: 600 DSNTVEAEIACGLGETLASGTRGTPWRISSGKFD-GVVQTLAFANLSEELLVR------- 445
D + + AE+ GLGETL G K D Q L + + L ++
Sbjct: 1320 DDSEIYAEVVRGLGETLVGAYPGRALSFICKKKDLNSPQVLGYPSKPIGLFIKRSIIFRS 1379
Query: 444 -----------GAGPADG----EVIRLTVDYSQKPLTVDPVFRRPLGQRLCAVGFFLERK 310
GAG D E ++ +DYS PL D FR+ + + G +E
Sbjct: 1380 DSNGEDLEGYAGAGLYDSVPMDEEEKVVIDYSSDPLITDGNFRQTILSNIARAGHAIEEL 1439
Query: 309 FGSPPDVEGCLVGKDIYIVQTRPQ 238
+GSP D+EG + IY+VQTRPQ
Sbjct: 1440 YGSPQDIEGVVRDGKIYVVQTRPQ 1463
>pir||T07050 hypothetical protein R1 - potato gi|3287270|emb|CAA70725.1| involved
in starch metabalism [Solanum tuberosum]
Length = 1464
Score = 60.1 bits (144), Expect = 2e-08
Identities = 44/144 (30%), Positives = 62/144 (42%), Gaps = 23/144 (15%)
Frame = -2
Query: 600 DSNTVEAEIACGLGETLASGTRGTPWRISSGKFD-GVVQTLAFANLSEELLVR------- 445
D + + AE+ GLGETL G K D Q L + + L ++
Sbjct: 1320 DDSEIYAEVVRGLGETLVGAYPGRALSFICKKKDLNSPQVLGYPSKPIGLFIKRSIIFRS 1379
Query: 444 -----------GAGPADG----EVIRLTVDYSQKPLTVDPVFRRPLGQRLCAVGFFLERK 310
GAG D E ++ +DYS PL D FR+ + + G +E
Sbjct: 1380 DSNGEDLEGYAGAGLYDSVPMDEEEKVVIDYSSDPLITDGNFRQTILSNIARAGHAIEEL 1439
Query: 309 FGSPPDVEGCLVGKDIYIVQTRPQ 238
+GSP D+EG + IY+VQTRPQ
Sbjct: 1440 YGSPQDIEGVVRDGKIYVVQTRPQ 1463
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,058,314
Number of Sequences: 1393205
Number of extensions: 13763528
Number of successful extensions: 34782
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 32844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34666
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
