Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002740A_C02 KMC002740A_c02
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO38487.1| putative valyl tRNA synthetase [Oryza sativa (jap... 67 2e-10
gb|AAN05549.1| putative valyl tRNA synthetase [Oryza sativa (jap... 65 6e-10
gb|AAL32771.1| similar to valyl tRNA synthetase [Arabidopsis tha... 64 1e-09
pir||F86280 protein T5E21.11 [imported] - Arabidopsis thaliana g... 64 1e-09
ref|NP_172913.1| valyl-tRNA synthetase, putative; protein id: At... 64 1e-09
>gb|AAO38487.1| putative valyl tRNA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 1054
Score = 67.4 bits (163), Expect = 2e-10
Identities = 43/103 (41%), Positives = 60/103 (57%), Gaps = 2/103 (1%)
Frame = -1
Query: 635 SSLTV-TENEAVPSGYVDAVVNESLSVYLELQGASSAELE-EAKKKKIDELNKQIERLEK 462
SSL + TEN+ P AVVN+ LSVYL+LQGA +AE+E E +KK +E+ K L +
Sbjct: 948 SSLKILTENDETPPDCATAVVNKDLSVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQ 1007
Query: 461 IMNAPGYREKVSPEIGAKNQEKLDSLKERLLLEEAAGLSLTSK 333
M A GY+EK + ++ KL S E+L + A L +K
Sbjct: 1008 KMEASGYKEKAPQNVQEEDMRKLTSFFEQLEIISEAEKKLDAK 1050
>gb|AAN05549.1| putative valyl tRNA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 1056
Score = 65.5 bits (158), Expect = 6e-10
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = -1
Query: 641 NLSSLTV-TENEAVPSGYVDAVVNESLSVYLELQGASSAELEEAK-KKKIDELNKQIERL 468
++SSL + TE++ P +VN+ LSVYL+L+GA + E E K +KK DE+ KQ + L
Sbjct: 951 SVSSLKILTEDDPTPPNCATNIVNKDLSVYLQLRGALNTEAEREKLRKKRDEIQKQHDTL 1010
Query: 467 EKIMNAPGYREKVSPEIGAKNQEKLDSLKERLLLEEAAGLSLTS 336
+ MNA GYREK ++ +K+ +L E L + A L S
Sbjct: 1011 SQKMNASGYREKAPQSKQDEDMKKIAALLEELEIIREAESELES 1054
>gb|AAL32771.1| similar to valyl tRNA synthetase [Arabidopsis thaliana]
Length = 1064
Score = 64.3 bits (155), Expect = 1e-09
Identities = 43/109 (39%), Positives = 56/109 (50%), Gaps = 3/109 (2%)
Frame = -1
Query: 641 NLSSLTVTEN--EAVPSGYVDAVVNESLSVYLELQGASSAELEEAK-KKKIDELNKQIER 471
NLSSL V A P G VNE+L VYLE+ GA + E E+ K + KI EL KQ E+
Sbjct: 952 NLSSLEVVSKGQHAAPPGSSVETVNENLKVYLEVDGAINTEAEQEKIRNKIGELQKQKEK 1011
Query: 470 LEKIMNAPGYREKVSPEIGAKNQEKLDSLKERLLLEEAAGLSLTSK*CN 324
L+K+M+ Y EKV I N KL + + E L ++ N
Sbjct: 1012 LQKMMSVSTYEEKVPANIKEDNANKLAKILQEFDFFEKESARLAAETSN 1060
>pir||F86280 protein T5E21.11 [imported] - Arabidopsis thaliana
gi|7527726|gb|AAF63175.1|AC010657_11 T5E21.11
[Arabidopsis thaliana]
Length = 1115
Score = 64.3 bits (155), Expect = 1e-09
Identities = 43/109 (39%), Positives = 56/109 (50%), Gaps = 3/109 (2%)
Frame = -1
Query: 641 NLSSLTVTEN--EAVPSGYVDAVVNESLSVYLELQGASSAELEEAK-KKKIDELNKQIER 471
NLSSL V A P G VNE+L VYLE+ GA + E E+ K + KI EL KQ E+
Sbjct: 1003 NLSSLEVVSKGQHAAPPGSSVETVNENLKVYLEVDGAINTEAEQEKIRNKIGELQKQKEK 1062
Query: 470 LEKIMNAPGYREKVSPEIGAKNQEKLDSLKERLLLEEAAGLSLTSK*CN 324
L+K+M+ Y EKV I N KL + + E L ++ N
Sbjct: 1063 LQKMMSVSTYEEKVPANIKEDNANKLAKILQEFDFFEKESARLAAETSN 1111
>ref|NP_172913.1| valyl-tRNA synthetase, putative; protein id: At1g14610.1, supported
by cDNA: gi_1890129 [Arabidopsis thaliana]
gi|21542452|sp|P93736|SYV_ARATH Valyl-tRNA synthetase
(Valine--tRNA ligase) (ValRS)
Length = 1108
Score = 64.3 bits (155), Expect = 1e-09
Identities = 43/109 (39%), Positives = 56/109 (50%), Gaps = 3/109 (2%)
Frame = -1
Query: 641 NLSSLTVTEN--EAVPSGYVDAVVNESLSVYLELQGASSAELEEAK-KKKIDELNKQIER 471
NLSSL V A P G VNE+L VYLE+ GA + E E+ K + KI EL KQ E+
Sbjct: 996 NLSSLEVVSKGQHAAPPGSSVETVNENLKVYLEVDGAINTEAEQEKIRNKIGELQKQKEK 1055
Query: 470 LEKIMNAPGYREKVSPEIGAKNQEKLDSLKERLLLEEAAGLSLTSK*CN 324
L+K+M+ Y EKV I N KL + + E L ++ N
Sbjct: 1056 LQKMMSVSTYEEKVPANIKEDNANKLAKILQEFDFFEKESARLAAETSN 1104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,402,070
Number of Sequences: 1393205
Number of extensions: 10684127
Number of successful extensions: 31773
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 30146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31691
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
