Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002737A_C01 KMC002737A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196822.1| NAM-like protein; protein id: At5g13180.1, supp... 94 3e-20
pir||T07182 hypothetical protein SENU5, senescence up-regulated ... 84 2e-15
ref|NP_180906.1| putative NAM (no apical meristem)-like protein;... 76 4e-13
dbj|BAA89801.1| OsNAC7 protein [Oryza sativa] 73 3e-12
ref|NP_564966.1| expressed protein; protein id: At1g69490.1, sup... 72 5e-12
>ref|NP_196822.1| NAM-like protein; protein id: At5g13180.1, supported by cDNA:
gi_14326559 [Arabidopsis thaliana]
gi|9955562|emb|CAC05446.1| NAM-like protein [Arabidopsis
thaliana] gi|14326560|gb|AAK60324.1|AF385734_1
AT5g13180/T19L5_140 [Arabidopsis thaliana]
gi|23506087|gb|AAN28903.1| At5g13180/T19L5_140
[Arabidopsis thaliana]
Length = 252
Score = 94.0 bits (232), Expect(2) = 3e-20
Identities = 44/74 (59%), Positives = 56/74 (75%)
Frame = -3
Query: 593 VGMKKTLVFYTGKPPHGSRTDWIMHEYRLLTNTNTTTTQGHVQVPMENWVLCRIFLKRRG 414
VG+KKTLVFY GKPPHGSRTDWIMHEYRL +++ ++ G P +NWVLCRIFLK+R
Sbjct: 110 VGLKKTLVFYKGKPPHGSRTDWIMHEYRL--SSSPPSSMG----PTQNWVLCRIFLKKRA 163
Query: 413 GVKNGEEEHSLNNI 372
G KN +++ N+
Sbjct: 164 GNKNDDDDGDSRNL 177
Score = 26.2 bits (56), Expect(2) = 3e-20
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 7/43 (16%)
Frame = -2
Query: 339 VFYDFLAQNKIN-----PASSSSSSATSGITDN--NESDESST 232
+F+DF+ + + P+S SS A+SG+T + SDE ++
Sbjct: 204 IFFDFMRKERTTDLNLLPSSPSSDHASSGVTTEIFSSSDEETS 246
>pir||T07182 hypothetical protein SENU5, senescence up-regulated - tomato
gi|1418990|emb|CAA99760.1| unknown [Lycopersicon
esculentum]
Length = 272
Score = 83.6 bits (205), Expect = 2e-15
Identities = 41/68 (60%), Positives = 47/68 (68%), Gaps = 1/68 (1%)
Frame = -3
Query: 593 VGMKKTLVFYTGKPPHGSRTDWIMHEYRLLT-NTNTTTTQGHVQVPMENWVLCRIFLKRR 417
+G+KKTLVFY GK PHG RT+WIMHEYRL +N QG NWV+CRIFLK+R
Sbjct: 113 IGLKKTLVFYRGKSPHGCRTNWIMHEYRLANLESNYHPIQG-------NWVICRIFLKKR 165
Query: 416 GGVKNGEE 393
G KN EE
Sbjct: 166 GNTKNKEE 173
Score = 34.7 bits (78), Expect = 0.94
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
Frame = -2
Query: 351 RGRVVFYDFLAQNKIN--PASSSSSSATSGITDNNESDE 241
+ ++FYDF+ +N N AS+SSS T T N ESD+
Sbjct: 215 KASIIFYDFMGRNNSNGVAASTSSSGITDLTTTNEESDD 253
>ref|NP_180906.1| putative NAM (no apical meristem)-like protein; protein id:
At2g33480.1, supported by cDNA: gi_13272418, supported
by cDNA: gi_15294215, supported by cDNA: gi_20147280
[Arabidopsis thaliana] gi|25408275|pir||A84746 probable
NAM (no apical meristem)-like protein [imported] -
Arabidopsis thaliana gi|2459430|gb|AAB80665.1| putative
NAM (no apical meristem)-like protein [Arabidopsis
thaliana] gi|13272419|gb|AAK17148.1|AF325080_1 putative
NAM (no apical meristem)-like protein [Arabidopsis
thaliana] gi|15294216|gb|AAK95285.1|AF410299_1
At2g33480/F4P9.25 [Arabidopsis thaliana]
gi|20147281|gb|AAM10354.1| At2g33480/F4P9.25
[Arabidopsis thaliana]
Length = 268
Score = 75.9 bits (185), Expect = 4e-13
Identities = 35/68 (51%), Positives = 47/68 (68%)
Frame = -3
Query: 593 VGMKKTLVFYTGKPPHGSRTDWIMHEYRLLTNTNTTTTQGHVQVPMENWVLCRIFLKRRG 414
VGMKKTLVFY GKPP+G+RT+W++HEYRL+ + Q + NWVLCR+FLK+R
Sbjct: 109 VGMKKTLVFYKGKPPNGTRTNWVLHEYRLV-----DSQQDSLYGQNMNWVLCRVFLKKRS 163
Query: 413 GVKNGEEE 390
+ +E
Sbjct: 164 NSNSKRKE 171
>dbj|BAA89801.1| OsNAC7 protein [Oryza sativa]
Length = 276
Score = 72.8 bits (177), Expect = 3e-12
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = -3
Query: 593 VGMKKTLVFYTGKPPHGSRTDWIMHEYRLLTNTNTTTTQGHVQVPMENWVLCRIFLKR 420
+GM+KTLVFY G+ PHG +TDWIMHEYRL Q +V V + WV+CR+F+K+
Sbjct: 111 IGMRKTLVFYVGRAPHGKKTDWIMHEYRL--------DQDNVDVQEDGWVVCRVFMKK 160
>ref|NP_564966.1| expressed protein; protein id: At1g69490.1, supported by cDNA:
21634., supported by cDNA: gi_13430577, supported by
cDNA: gi_15293162 [Arabidopsis thaliana]
gi|25354720|pir||T52343 hypothetical protein [imported]
- Arabidopsis thaliana gi|2780192|emb|CAA10955.1|
unnamed protein product [Arabidopsis thaliana]
gi|12597796|gb|AAG60108.1|AC073178_19 unknown protein
[Arabidopsis thaliana]
gi|13430578|gb|AAK25911.1|AF360201_1 unknown protein
[Arabidopsis thaliana] gi|15293163|gb|AAK93692.1|
unknown protein [Arabidopsis thaliana]
Length = 268
Score = 72.0 bits (175), Expect = 5e-12
Identities = 33/77 (42%), Positives = 51/77 (65%)
Frame = -3
Query: 593 VGMKKTLVFYTGKPPHGSRTDWIMHEYRLLTNTNTTTTQGHVQVPMENWVLCRIFLKRRG 414
VG+KK LVFY G+PP G +TDWIMHEYR L ++ +T+ + + ++ WVLCRI+ KR
Sbjct: 106 VGVKKALVFYKGRPPKGIKTDWIMHEYR-LHDSRKASTKRNGSMRLDEWVLCRIYKKRGA 164
Query: 413 GVKNGEEEHSLNNISLK 363
E+E ++ + ++
Sbjct: 165 SKLLNEQEGFMDEVLME 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,586,494
Number of Sequences: 1393205
Number of extensions: 12480558
Number of successful extensions: 41111
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 34749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39558
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
