Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002731A_C01 KMC002731A_c01
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN31713.1| putative coronatine-insensitive 1 [Glycine max] 251 5e-66
ref|NP_565919.1| coronatine-insensitive 1 (COI1), AtFBL2; protei... 206 2e-52
dbj|BAB84399.1| P0529E05.15 [Oryza sativa (japonica cultivar-gro... 172 4e-42
ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; ... 72 1e-11
emb|CAD40545.1| OSJNBa0072K14.1 [Oryza sativa (japonica cultivar... 67 2e-10
>gb|AAN31713.1| putative coronatine-insensitive 1 [Glycine max]
Length = 237
Score = 251 bits (642), Expect = 5e-66
Identities = 124/150 (82%), Positives = 131/150 (86%)
Frame = -1
Query: 716 GGLTDVGLSYIGQYSXNVRWMLLGAVGETDEGLLEFAKGCPNLQKLEMRGCSFFSEHALA 537
GGLTDVGL YIGQYS NVRWMLLG VGE+D GLLEFAKGCP+LQKLEMRGC FFSE ALA
Sbjct: 89 GGLTDVGLGYIGQYSPNVRWMLLGYVGESDAGLLEFAKGCPSLQKLEMRGCLFFSERALA 148
Query: 536 VAATQLTSLRYLWVQGYGASPTGRDLLAMARPFWNLELIPSRRVVVNNNMDGPVVSVHHP 357
VAATQLTSLRYLWVQGYG SP+GRDLL MARPFWN+ELIPSR+V N N D VV V HP
Sbjct: 149 VAATQLTSLRYLWVQGYGVSPSGRDLLVMARPFWNIELIPSRKVATNTNPDETVV-VEHP 207
Query: 356 AHILAYYSLAGPRSDFPDTVVPLDPATFVE 267
AHILAYYSLAG RSDFPDTVVPLD AT ++
Sbjct: 208 AHILAYYSLAGQRSDFPDTVVPLDTATMLD 237
>ref|NP_565919.1| coronatine-insensitive 1 (COI1), AtFBL2; protein id: At2g39940.1,
supported by cDNA: gi_15010647, supported by cDNA:
gi_3158393 [Arabidopsis thaliana]
gi|25352267|pir||T52139 LRR-containing F-box protein
[imported] - Arabidopsis thaliana
gi|2088647|gb|AAB95279.1| coronatine-insensitive 1
(COI1), AtFBL2 [Arabidopsis thaliana]
gi|3158394|gb|AAC17498.1| LRR-containing F-box protein
[Arabidopsis thaliana] gi|15010648|gb|AAK73983.1|
At2g39940/T28M21.10 [Arabidopsis thaliana]
gi|22137082|gb|AAM91386.1| At2g39940/T28M21.10
[Arabidopsis thaliana]
Length = 592
Score = 206 bits (525), Expect = 2e-52
Identities = 102/140 (72%), Positives = 116/140 (82%)
Frame = -1
Query: 716 GGLTDVGLSYIGQYSXNVRWMLLGAVGETDEGLLEFAKGCPNLQKLEMRGCSFFSEHALA 537
GGLTD+GLSYIGQYS NVRWMLLG VGE+DEGL+EF++GCPNLQKLEMRGC FSE A+A
Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA 506
Query: 536 VAATQLTSLRYLWVQGYGASPTGRDLLAMARPFWNLELIPSRRVVVNNNMDGPVVSVHHP 357
A T+L SLRYLWVQGY AS TG+DL+ MARP+WN+ELIPSRR V N G + + HP
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR-VPEVNQQGEIREMEHP 565
Query: 356 AHILAYYSLAGPRSDFPDTV 297
AHILAYYSLAG R+D P TV
Sbjct: 566 AHILAYYSLAGQRTDCPTTV 585
>dbj|BAB84399.1| P0529E05.15 [Oryza sativa (japonica cultivar-group)]
Length = 630
Score = 172 bits (436), Expect = 4e-42
Identities = 88/146 (60%), Positives = 104/146 (70%)
Frame = -1
Query: 716 GGLTDVGLSYIGQYSXNVRWMLLGAVGETDEGLLEFAKGCPNLQKLEMRGCSFFSEHALA 537
GGL+D GLSYIGQYS N+++MLLG VGE+D GL+ FA GC NLQKLE+R C F SE AL+
Sbjct: 486 GGLSDDGLSYIGQYSGNIQYMLLGNVGESDHGLIRFAVGCTNLQKLELRSCCF-SERALS 544
Query: 536 VAATQLTSLRYLWVQGYGASPTGRDLLAMARPFWNLELIPSRRVVVNNNMDGPVVSVHHP 357
+A Q+ SLRY+WVQGY AS TG DLL MARPFWN+E P N+ + V
Sbjct: 545 LAVLQMPSLRYIWVQGYRASQTGLDLLLMARPFWNIEFTPPSPESFNHMTEDGEPCVDSH 604
Query: 356 AHILAYYSLAGPRSDFPDTVVPLDPA 279
A +LAYYSLAG RSD P V+PL PA
Sbjct: 605 AQVLAYYSLAGRRSDCPQWVIPLHPA 630
>ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; protein id:
At3g62980.1, supported by cDNA: gi_11935208, supported
by cDNA: gi_2352493 [Arabidopsis thaliana]
gi|11282337|pir||T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana
gi|2352492|gb|AAB69175.1| transport inhibitor response 1
[Arabidopsis thaliana] gi|2352494|gb|AAB69176.1|
transport inhibitor response 1 [Arabidopsis thaliana]
gi|7573427|emb|CAB87743.1| transport inhibitor response
1 (TIR1) [Arabidopsis thaliana]
gi|25054937|gb|AAN71945.1| putative transport inhibitor
response TIR1, AtFBL1 protein [Arabidopsis thaliana]
Length = 594
Score = 71.6 bits (174), Expect = 1e-11
Identities = 46/144 (31%), Positives = 69/144 (46%)
Frame = -1
Query: 716 GGLTDVGLSYIGQYSXNVRWMLLGAVGETDEGLLEFAKGCPNLQKLEMRGCSFFSEHALA 537
G LTD YIG Y+ + + + G++D G+ GC +L+KLE+R C F + AL
Sbjct: 441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALL 499
Query: 536 VAATQLTSLRYLWVQGYGASPTGRDLLAMARPFWNLELIPSRRVVVNNNMDGPVVSVHHP 357
A++L ++R LW+ S LL P N+E+I R + PV
Sbjct: 500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPV------ 553
Query: 356 AHILAYYSLAGPRSDFPDTVVPLD 285
+ Y ++AGPR D P V +D
Sbjct: 554 ERVFIYRTVAGPRFDMPGFVWNMD 577
>emb|CAD40545.1| OSJNBa0072K14.1 [Oryza sativa (japonica cultivar-group)]
Length = 575
Score = 67.4 bits (163), Expect = 2e-10
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Frame = -1
Query: 716 GGLTDVGLSYIGQYSXNVRWMLLGAVGETDEGLLEFAKGCPNLQKLEMRGCSFFSEHALA 537
G LTD YIG+Y+ + + + G++D+G++ GC NL+KLE+R S F + AL
Sbjct: 436 GLLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLRKLEIRD-SPFGDAALL 494
Query: 536 VAATQLTSLRYLWVQGYGASPTGRDLLAMARPFWNLELIPSR---RVVVNNNMDGPVVSV 366
+ ++R LW+ + G +LA P N+E+I R + N+ D P V
Sbjct: 495 GNFARYETMRSLWMSSCNVTLKGCQVLASKMPMLNVEVINERDGSNEMEENHGDLPKVE- 553
Query: 365 HHPAHILAYYSLAGPRSDFPDTV 297
+ Y + AG R D P+ V
Sbjct: 554 ----KLYVYRTTAGARDDAPNFV 572
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,961,482
Number of Sequences: 1393205
Number of extensions: 15512630
Number of successful extensions: 45612
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 42443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45527
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
