Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002730A_C01 KMC002730A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G88637 protein F53H1.4 [imported] - Caenorhabditis elegans 33 1.7
ref|NP_500064.2| Putative transcription regulator with PHD zinc ... 33 1.7
gb|AAK61313.1|AF295359_4 NarK [Paracoccus pantotrophus] 32 2.9
dbj|BAB79331.1| ORF4 [TT virus] 32 3.8
ref|NP_115510.1| hypothetical protein DKFZp434P0316 [Homo sapien... 31 6.5
>pir||G88637 protein F53H1.4 [imported] - Caenorhabditis elegans
Length = 1378
Score = 33.1 bits (74), Expect = 1.7
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Frame = +3
Query: 9 RKLYSYEKLRSSKHNQRL-RVHFTQSTKKTSQSMAREFIMQTKGTKT*KKRAKKPRHRLQ 185
R+L +K + K ++L + Q KK + + ++ K K +K K R +
Sbjct: 234 RRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAARKAEK 293
Query: 186 KPKPLGLVQKVPRSLIEFPAVIHA-----CAWPSPRTVRGQKRLKR--KKRSIRFCHHAC 344
K K G + K + P+ +A W R G K+++ K+R + + AC
Sbjct: 294 KEKNNGTMDKFLKKDTGSPSSKNAPLFSPSKWGEKRIAVGVKKMEDAWKRRDLELYNEAC 353
Query: 345 SWIRR 359
SW +
Sbjct: 354 SWCEK 358
>ref|NP_500064.2| Putative transcription regulator with PHD zinc finger
[Caenorhabditis elegans] gi|22532904|gb|AAC02578.2|
Hypothetical protein F53H1.4 [Caenorhabditis elegans]
Length = 1370
Score = 33.1 bits (74), Expect = 1.7
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Frame = +3
Query: 9 RKLYSYEKLRSSKHNQRL-RVHFTQSTKKTSQSMAREFIMQTKGTKT*KKRAKKPRHRLQ 185
R+L +K + K ++L + Q KK + + ++ K K +K K R +
Sbjct: 234 RRLQEKQKEKDEKEKEKLEKKQKEQEEKKQKKEEEKAKKLKEKEEKLKEKEEKAARKAEK 293
Query: 186 KPKPLGLVQKVPRSLIEFPAVIHA-----CAWPSPRTVRGQKRLKR--KKRSIRFCHHAC 344
K K G + K + P+ +A W R G K+++ K+R + + AC
Sbjct: 294 KEKNNGTMDKFLKKDTGSPSSKNAPLFSPSKWGEKRIAVGVKKMEDAWKRRDLELYNEAC 353
Query: 345 SWIRR 359
SW +
Sbjct: 354 SWCEK 358
>gb|AAK61313.1|AF295359_4 NarK [Paracoccus pantotrophus]
Length = 905
Score = 32.3 bits (72), Expect = 2.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 274 GEGHAHAWMTAGNSISDLGTF*TKPKGLGFWSLWRGFLALFF 149
G G W+ AG I+ +G + L FW + GF+ALFF
Sbjct: 747 GGGRVTFWVFAG-MIASVGLVIVSLQALSFWGFFAGFMALFF 787
>dbj|BAB79331.1| ORF4 [TT virus]
Length = 267
Score = 32.0 bits (71), Expect = 3.8
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 36 RSSKHNQRLRVHFTQSTKKTSQSMAREFIMQTKGTKT*KKRAKKPRHRLQKPKP 197
R+ ++ +R R+HFTQST K ARE Q G +T +RA+ P++ + P
Sbjct: 114 RNPRNPRRRRLHFTQSTPK----RARE---QQLGRRTPTRRARDPKNTTPQAAP 160
>ref|NP_115510.1| hypothetical protein DKFZp434P0316 [Homo sapiens]
gi|12053061|emb|CAB66708.1| hypothetical protein [Homo
sapiens]
Length = 1663
Score = 31.2 bits (69), Expect = 6.5
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 2/64 (3%)
Frame = +1
Query: 235 SFQQSSTHVRGLLHAQCVGKNA*NAKNAASGFA-TTHVRGSGGAHAWASGYSNSSSTHV- 408
S + SS +R LLHAQC+G + + +T R GG+H Y S H+
Sbjct: 1516 STKASSQIIRELLHAQCLGSPCYKRVTDMADYTYSTVPRRCGGSHTLTYPYHRSRPQHLP 1575
Query: 409 RGIH 420
RG++
Sbjct: 1576 RGLY 1579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,341,513
Number of Sequences: 1393205
Number of extensions: 9491495
Number of successful extensions: 30107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30084
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
