Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002728A_C01 KMC002728A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thalia... 129 4e-29
pir||G96809 protein F28K19.28 [imported] - Arabidopsis thaliana ... 129 4e-29
gb|AAF18647.1|AC006228_18 F5J5.6 [Arabidopsis thaliana] 116 2e-25
ref|NP_564469.1| expressed protein; protein id: At1g36070.1, sup... 116 2e-25
gb|AAG52318.1|AC021666_7 unknown protein; 4584-7806 [Arabidopsis... 116 2e-25
>gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana]
gi|25090156|gb|AAN72242.1| At1g78070/F28K19_28
[Arabidopsis thaliana]
Length = 449
Score = 129 bits (323), Expect = 4e-29
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -1
Query: 630 LAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTR 451
LAMAEPADF+H+FD+ +GY QCQEID+FGEIAG+SFSPDTEALFVGVADRTYGSLLEF R
Sbjct: 379 LAMAEPADFVHLFDTEAGYSQCQEIDLFGEIAGISFSPDTEALFVGVADRTYGSLLEFNR 438
Query: 450 NRNHHYVDTMF 418
RNH YVD++F
Sbjct: 439 KRNHSYVDSIF 449
>pir||G96809 protein F28K19.28 [imported] - Arabidopsis thaliana
gi|6573770|gb|AAF17690.1|AC009243_17 F28K19.28
[Arabidopsis thaliana]
Length = 523
Score = 129 bits (323), Expect = 4e-29
Identities = 58/71 (81%), Positives = 66/71 (92%)
Frame = -1
Query: 630 LAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTR 451
LAMAEPADF+H+FD+ +GY QCQEID+FGEIAG+SFSPDTEALFVGVADRTYGSLLEF R
Sbjct: 453 LAMAEPADFVHLFDTEAGYSQCQEIDLFGEIAGISFSPDTEALFVGVADRTYGSLLEFNR 512
Query: 450 NRNHHYVDTMF 418
RNH YVD++F
Sbjct: 513 KRNHSYVDSIF 523
>gb|AAF18647.1|AC006228_18 F5J5.6 [Arabidopsis thaliana]
Length = 527
Score = 116 bits (291), Expect = 2e-25
Identities = 51/71 (71%), Positives = 65/71 (90%)
Frame = -1
Query: 630 LAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTR 451
LAMAEPADF+H+FD+ SG+ Q QEID+FGEIAG+SFSPDTEAL+VGVADRTYGSLLE+ R
Sbjct: 457 LAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDTEALYVGVADRTYGSLLEYKR 516
Query: 450 NRNHHYVDTMF 418
+++HY+D+ +
Sbjct: 517 RKDNHYMDSFY 527
>ref|NP_564469.1| expressed protein; protein id: At1g36070.1, supported by cDNA:
148082. [Arabidopsis thaliana]
Length = 418
Score = 116 bits (291), Expect = 2e-25
Identities = 51/71 (71%), Positives = 65/71 (90%)
Frame = -1
Query: 630 LAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTR 451
LAMAEPADF+H+FD+ SG+ Q QEID+FGEIAG+SFSPDTEAL+VGVADRTYGSLLE+ R
Sbjct: 348 LAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDTEALYVGVADRTYGSLLEYKR 407
Query: 450 NRNHHYVDTMF 418
+++HY+D+ +
Sbjct: 408 RKDNHYMDSFY 418
>gb|AAG52318.1|AC021666_7 unknown protein; 4584-7806 [Arabidopsis thaliana]
Length = 413
Score = 116 bits (291), Expect = 2e-25
Identities = 51/71 (71%), Positives = 65/71 (90%)
Frame = -1
Query: 630 LAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTR 451
LAMAEPADF+H+FD+ SG+ Q QEID+FGEIAG+SFSPDTEAL+VGVADRTYGSLLE+ R
Sbjct: 343 LAMAEPADFVHIFDTQSGFLQSQEIDLFGEIAGISFSPDTEALYVGVADRTYGSLLEYKR 402
Query: 450 NRNHHYVDTMF 418
+++HY+D+ +
Sbjct: 403 RKDNHYMDSFY 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,272,592
Number of Sequences: 1393205
Number of extensions: 9891971
Number of successful extensions: 18923
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18919
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
