Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002724A_C01 KMC002724A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD51864.1|AF075682_1 100 kDa folding protein [turkey adenovi... 33 1.9
ref|NP_047397.1| 100K protein [turkey adenovirus 3] gi|3769498|g... 33 1.9
gb|AAC58178.1| RNA dependent RNA polymerase [Hepatitis GB virus C] 32 2.5
ref|NP_702824.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.3
ref|NP_779177.1| phage-related protein [Xylella fastidiosa Temec... 31 7.3
>gb|AAD51864.1|AF075682_1 100 kDa folding protein [turkey adenovirus 3]
Length = 692
Score = 32.7 bits (73), Expect = 1.9
Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 5/82 (6%)
Frame = +3
Query: 225 NTNNPNHTR*TDLNTGLD-----LYLYILLSKS*HIHMIMRSINSGRCSSMSPSKRHHAP 389
N NNPN DLN G D ++LY++++ + + ++IN +SM + P
Sbjct: 354 NNNNPNLHTTLDLNDGEDYMVDTIFLYLIMTWQTPMGVWQQNINEKNLASMKDFLTKNGP 413
Query: 390 LFLLLQWTTEWVADYTRAWMMD 455
+L + ++ +AD W+ D
Sbjct: 414 KLILCR-DSDSMADMLADWITD 434
>ref|NP_047397.1| 100K protein [turkey adenovirus 3] gi|3769498|gb|AAC64535.1| 100K
protein [turkey adenovirus 3]
Length = 680
Score = 32.7 bits (73), Expect = 1.9
Identities = 22/82 (26%), Positives = 40/82 (47%), Gaps = 5/82 (6%)
Frame = +3
Query: 225 NTNNPNHTR*TDLNTGLD-----LYLYILLSKS*HIHMIMRSINSGRCSSMSPSKRHHAP 389
N NNPN DLN G D ++LY++++ + + ++IN +SM + P
Sbjct: 353 NNNNPNLHTTLDLNDGEDYMVDTIFLYLIMTWQTAMGVWQQNINEKNLASMKDFLTKNGP 412
Query: 390 LFLLLQWTTEWVADYTRAWMMD 455
+L + ++ +AD W+ D
Sbjct: 413 KLILCR-DSDSMADMLADWITD 433
>gb|AAC58178.1| RNA dependent RNA polymerase [Hepatitis GB virus C]
Length = 92
Score = 32.3 bits (72), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 344 RKVFFHEPKQEASCPTVPPPPMDNRVGGRLYKG 442
++VFF +PK+E P + PP+D R+ +L G
Sbjct: 25 KEVFFQDPKEEKPPPLIVFPPLDFRIAEKLILG 57
>ref|NP_702824.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498240|emb|CAD49211.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4605
Score = 31.6 bits (70), Expect = 4.3
Identities = 16/54 (29%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = +3
Query: 39 RNKLLNYS*IY*KDAHDHLFYSKHRNKREK-EVHNPYT*IKLNRHGSCLHSSSQ 197
+N + Y +Y KD H H S K++K + HN + + +N H + ++SS++
Sbjct: 1361 KNNISEY--VYDKDTHTHTNISSEYYKKKKYDTHNDFRTMLINNHNNNIYSSNK 1412
>ref|NP_779177.1| phage-related protein [Xylella fastidiosa Temecula1]
gi|28199070|ref|NP_779384.1| phage-related protein
[Xylella fastidiosa Temecula1]
gi|28056954|gb|AAO28826.1| phage-related protein
[Xylella fastidiosa Temecula1]
gi|28057168|gb|AAO29033.1| phage-related protein
[Xylella fastidiosa Temecula1]
Length = 276
Score = 30.8 bits (68), Expect = 7.3
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 306 TLREEYRGRDLIQCSDLSILYDLDYWCCQVR--GTDFIVVKNCGDRNHAY 163
T R+ R R L +DL +L+ D VR GTD+I+ CGD +H Y
Sbjct: 57 TSRQYNRVRLLAGYADLRLLFVGDIIKPSVRRDGTDYIIELECGDGDHDY 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,568,551
Number of Sequences: 1393205
Number of extensions: 9592106
Number of successful extensions: 24602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24575
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
