Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002721A_C03 KMC002721A_c03
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_343963.1| Hypothetical protein [Sulfolobus solfataricus] ... 33 3.2
dbj|BAA33376.1| ACC synthase [Cucumis sativus] 33 3.2
ref|NP_702862.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.5
ref|NP_715188.1| ATPases with chaperone activity, ATP-binding su... 32 7.1
>ref|NP_343963.1| Hypothetical protein [Sulfolobus solfataricus]
gi|25376319|pir||B90437 hypothetical protein SSO2632
[imported] - Sulfolobus solfataricus
gi|13815941|gb|AAK42753.1| Hypothetical protein
[Sulfolobus solfataricus]
Length = 377
Score = 33.1 bits (74), Expect = 3.2
Identities = 27/98 (27%), Positives = 51/98 (51%), Gaps = 1/98 (1%)
Frame = -1
Query: 386 EAVMNQGSIIFLLLARLSDLSST-FLTILMHTAYLIDHLSDLLNICIWAYIHNLHNLHAT 210
+A++++ S+I LL RL D+ + L ILM++AY++ D+LN + +L
Sbjct: 171 KALLDKSSVINDLLVRLEDMKNDGTLDILMNSAYVVKTFRDMLN------DEAIQSLGRY 224
Query: 209 CLYDSDLLFSFDDGTLKNNPTALI**TFGKCIILEDVI 96
+++ DD TLK+ + T K ++E+V+
Sbjct: 225 ISNSLEIMREIDDETLKSIKS-----TMKKMRLIENVL 257
>dbj|BAA33376.1| ACC synthase [Cucumis sativus]
Length = 481
Score = 33.1 bits (74), Expect = 3.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 414 YRLCCLDLSTHSWSLMILR---FVPYIKSAKNDNVSFRVIIIHGTKSGKKIKENL 569
+R+C ++S + L I R FV ++S NVS IH +K K IK+N+
Sbjct: 405 FRVCFANMSQSTLKLAIRRLKSFVQELRSVSTPNVSTTTTNIHDSKFSKNIKKNI 459
>ref|NP_702862.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498279|emb|CAD49251.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1686
Score = 32.3 bits (72), Expect = 5.5
Identities = 23/73 (31%), Positives = 39/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 2 YFNKITLNFLIHQD*SS---FIFRNSNSSDSYKDI*HLLKLYTFQKFIKLKL*DCSSKYH 172
YFNKI +N LIH++ + F + NS + Y ++KLY +IK +C +H
Sbjct: 358 YFNKIEINNLIHKENENNKLFFLQLLNSFNDY-----IMKLYNC-IYIKYSKCECLFFFH 411
Query: 173 --HQKKREDHCHI 205
+Q +E+ C++
Sbjct: 412 IINQLNKEESCYV 424
>ref|NP_715188.1| ATPases with chaperone activity, ATP-binding subunit
[Wigglesworthia brevipalpis]
Length = 601
Score = 32.0 bits (71), Expect = 7.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 165 FEEQSYSFNLMNFWK---VYNFRRCYISLYESELLELRKINELQS**IRKFKVIL 10
F ++ YSF+++ + K Y F C I L E L INE++ I FK++L
Sbjct: 381 FNDKVYSFDVLQYNKNNLEYRFNTCLIKLVEKNPNSLILINEIEKSHIDFFKILL 435
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,484,952
Number of Sequences: 1393205
Number of extensions: 10746492
Number of successful extensions: 25567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25561
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
