Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002705A_C01 KMC002705A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08871 desiccation protective protein LEA5 - soybean gi|173... 86 3e-16
sp|Q39644|LEA5_CITSI Late embryogenesis abundant protein Lea5 gi... 75 3e-13
sp|P46522|LE5D_GOSHI Late embryogenesis abundant protein Lea5-D ... 74 1e-12
sp|P46521|LE5A_GOSHI Late embryogenesis abundant protein Lea5-A ... 73 2e-12
pir||T01984 late-embryogenesis protein lea5 - common tobacco gi|... 67 2e-10
>pir||T08871 desiccation protective protein LEA5 - soybean
gi|1732556|gb|AAB38782.1| desiccation protective protein
LEA5
Length = 113
Score = 85.5 bits (210), Expect = 3e-16
Identities = 57/106 (53%), Positives = 67/106 (62%), Gaps = 14/106 (13%)
Frame = -3
Query: 468 MARSLSVSQAHRVIKVLVAE---FLPLHRRGYAAAAAATSDAAVSV-------RVGLIRS 319
MARSLS QA R I VLVA+ +P+HRRGYA A SD +V V R G++
Sbjct: 1 MARSLS--QAKR-IGVLVAQSISLIPVHRRGYAVA----SDVSVRVGLGNIGRRNGIVGG 53
Query: 318 IEEKPVLSEAR----SPWAPDPVTGYYRPINCTPQIDPVELRQMLL 193
+EEKP + + WAPDPVTGYYRPIN TP+IDPVELR LL
Sbjct: 54 VEEKPDTRDGSKAYSTDWAPDPVTGYYRPINHTPEIDPVELRHRLL 99
>sp|Q39644|LEA5_CITSI Late embryogenesis abundant protein Lea5 gi|1084390|pir||S53501
late-embryogenesis protein lea5 - sweet orange
gi|599726|emb|CAA86851.1| Lea5 protein [Citrus sinensis]
Length = 97
Score = 75.5 bits (184), Expect = 3e-13
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Frame = -3
Query: 405 LPLHRRGYAAAAAATSDAAVSVRVGLIRSIEEKPVLSE---ARSPWAPDPVTGYYRPINC 235
L + RRGYAAAA + + R G++ + +P + E A S WAPDP+TGYYRP N
Sbjct: 21 LSISRRGYAAAAPLGTIS----RTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENR 76
Query: 234 TPQIDPVELRQMLLNHKFRS 175
+IDP ELR+MLLNHK R+
Sbjct: 77 AVEIDPAELREMLLNHKVRA 96
>sp|P46522|LE5D_GOSHI Late embryogenesis abundant protein Lea5-D gi|7484729|pir||T09877
late embryogenesis-abundant protein Lea5-D - upland
cotton gi|167349|gb|AAA18544.1| late
embryogenesis-abundant protein gi|167351|gb|AAA18526.1|
late embryogenesis-abundant protein
Length = 105
Score = 73.6 bits (179), Expect = 1e-12
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Frame = -3
Query: 408 FLPLHRRGYAAAAAATSDAAVSVRVGLIRSIEEKPVLSEARSP--------WAPDPVTGY 253
++ + RRGY+ A A A+ R G + +E + + E+ S WAPDPVTGY
Sbjct: 20 YVSISRRGYSGAPPAAVTASFG-RPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGY 78
Query: 252 YRPINCTPQIDPVELRQMLLNHKFRS 175
YRP NC +ID ELR+MLLNH+ RS
Sbjct: 79 YRPENCGAEIDAAELREMLLNHRVRS 104
>sp|P46521|LE5A_GOSHI Late embryogenesis abundant protein Lea5-A gi|7484728|pir||T09874
late embryogenesis-abundant protein Lea5-A - upland
cotton gi|167345|gb|AAA18545.1| late
embryogenesis-abundant protein gi|167347|gb|AAA18538.1|
Lea5-A late embryogenesis-abundant protein
Length = 105
Score = 73.2 bits (178), Expect = 2e-12
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Frame = -3
Query: 468 MARSLSVSQAHRVIKVLVAEFLPLHRRGYAAAAAATSDAAVSVRVGLIRSIEEKPVLSEA 289
MARS+S S V A ++ + RRGY+ A A A+ R G + +E + + E+
Sbjct: 1 MARSVS-SFKFLGASVFDALYVSISRRGYSGAPPAAVTASFG-RPGAMGKVERRYAMKES 58
Query: 288 RSP--------WAPDPVTGYYRPINCTPQIDPVELRQMLLNHKFRS 175
S WAPDPVTGYYRP NC +ID +LR+M+LNH+ RS
Sbjct: 59 SSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
>pir||T01984 late-embryogenesis protein lea5 - common tobacco
gi|2981167|gb|AAC06242.1| late embryogenis abundant
protein 5 [Nicotiana tabacum]
Length = 97
Score = 66.6 bits (161), Expect = 2e-10
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Frame = -3
Query: 468 MARSLSVSQAHRVIKVLVAEFLP--LHRRGYAAAAAATSDAAV---SVRVGLIRSIEEKP 304
MARS S S ++I V + + + RRGYAAA++A+ V V + +++ EE
Sbjct: 1 MARSFSNS---KLISAFVVDTVSSFVSRRGYAAASSASVPGGVRGSGVNI-MMKKWEES- 55
Query: 303 VLSEARSPWAPDPVTGYYRPINCTPQIDPVELRQMLLNHKFR 178
S+ + W PDPVTGYYRP + +ID ELRQMLLNHK R
Sbjct: 56 --SKKTTSWVPDPVTGYYRPESHAKEIDAAELRQMLLNHKPR 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,866,778
Number of Sequences: 1393205
Number of extensions: 9891759
Number of successful extensions: 34331
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 32597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34076
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
