Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002704A_C01 KMC002704A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67129.1| putative ABC transporter protein [Arabidopsis tha... 159 2e-38
ref|NP_176196.1| ABC transporter family protein; protein id: At1... 159 2e-38
ref|NP_566543.1| ABC transporter family protein; protein id: At3... 148 5e-35
gb|AAK91463.1| AT3g16340/MYA6_15 [Arabidopsis thaliana] 148 5e-35
ref|NP_683388.1| expressed protein; protein id: At1g45206.1 [Ara... 148 5e-35
>gb|AAL67129.1| putative ABC transporter protein [Arabidopsis thaliana]
Length = 626
Score = 159 bits (402), Expect = 2e-38
Identities = 70/97 (72%), Positives = 78/97 (80%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVSPYRDRTPGLSVPGRSDQPALKDYIEDHY 368
GFFIP PKIPKWW+WYYWICPVAWTVYGLIVS Y D + V G + +K YIEDHY
Sbjct: 530 GFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHY 589
Query: 367 GFKSDFMGPVACVLVAFPVFFAFVFAFAIKVLNFQTR 257
GF+SDFMGPVA VL+AF VFFAF+FAF I+ LNFQTR
Sbjct: 590 GFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 626
>ref|NP_176196.1| ABC transporter family protein; protein id: At1g59870.1 [Arabidopsis
thaliana] gi|25404241|pir||H96622 probable ABC
transporter F23H11.19 [imported] - Arabidopsis thaliana
gi|5080820|gb|AAD39329.1|AC007258_18 Putative ABC
transporter [Arabidopsis thaliana]
gi|28144339|tpg|DAA00876.1| TPA: PDR8 ABC transporter
[Arabidopsis thaliana]
Length = 1469
Score = 159 bits (402), Expect = 2e-38
Identities = 70/97 (72%), Positives = 78/97 (80%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVSPYRDRTPGLSVPGRSDQPALKDYIEDHY 368
GFFIP PKIPKWW+WYYWICPVAWTVYGLIVS Y D + V G + +K YIEDHY
Sbjct: 1373 GFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHY 1432
Query: 367 GFKSDFMGPVACVLVAFPVFFAFVFAFAIKVLNFQTR 257
GF+SDFMGPVA VL+AF VFFAF+FAF I+ LNFQTR
Sbjct: 1433 GFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
Score = 45.8 bits (107), Expect = 3e-04
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVS 452
GF +P KIP WW W YW+ P+ + GL+V+
Sbjct: 702 GFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVN 733
>ref|NP_566543.1| ABC transporter family protein; protein id: At3g16340.1 [Arabidopsis
thaliana] gi|2062169|gb|AAB63643.1| ABC transporter
(PDR5-like) isolog [Arabidopsis thaliana]
gi|9279716|dbj|BAB01273.1| ABC transporter [Arabidopsis
thaliana] gi|28144351|tpg|DAA00870.1| TPA: PDR1 ABC
transporter [Arabidopsis thaliana]
Length = 1416
Score = 148 bits (373), Expect = 5e-35
Identities = 63/97 (64%), Positives = 76/97 (77%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVSPYRDRTPGLSVPGRSDQPALKDYIEDHY 368
GF IP P+IPKWW+WYYWICPVAWTVYGLIVS Y D + VPG ++ P +K YIE+HY
Sbjct: 1320 GFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHY 1379
Query: 367 GFKSDFMGPVACVLVAFPVFFAFVFAFAIKVLNFQTR 257
G+ +DFM P+A VLV F +FFAF+FAF I+ LNFQ R
Sbjct: 1380 GYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
Score = 46.6 bits (109), Expect = 2e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVS 452
GF +P +IPKWW W YW+ P+A+T L V+
Sbjct: 678 GFIVPRGEIPKWWKWAYWVSPMAYTYDALTVN 709
>gb|AAK91463.1| AT3g16340/MYA6_15 [Arabidopsis thaliana]
Length = 412
Score = 148 bits (373), Expect = 5e-35
Identities = 63/97 (64%), Positives = 76/97 (77%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVSPYRDRTPGLSVPGRSDQPALKDYIEDHY 368
GF IP P+IPKWW+WYYWICPVAWTVYGLIVS Y D + VPG ++ P +K YIE+HY
Sbjct: 316 GFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHY 375
Query: 367 GFKSDFMGPVACVLVAFPVFFAFVFAFAIKVLNFQTR 257
G+ +DFM P+A VLV F +FFAF+FAF I+ LNFQ R
Sbjct: 376 GYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 412
>ref|NP_683388.1| expressed protein; protein id: At1g45206.1 [Arabidopsis thaliana]
Length = 472
Score = 148 bits (373), Expect = 5e-35
Identities = 63/97 (64%), Positives = 76/97 (77%)
Frame = -1
Query: 547 GFFIPNPKIPKWWVWYYWICPVAWTVYGLIVSPYRDRTPGLSVPGRSDQPALKDYIEDHY 368
GF IP P+IPKWW+WYYWICPVAWTVYGLIVS Y D + VPG ++ P +K YIE+HY
Sbjct: 376 GFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHY 435
Query: 367 GFKSDFMGPVACVLVAFPVFFAFVFAFAIKVLNFQTR 257
G+ +DFM P+A VLV F +FFAF+FAF I+ LNFQ R
Sbjct: 436 GYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,177,975
Number of Sequences: 1393205
Number of extensions: 10430422
Number of successful extensions: 24902
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 24099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24836
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
