Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002686A_C01 KMC002686A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subuni... 311 4e-84
sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subu... 305 2e-82
sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subu... 296 1e-79
ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit ... 293 6e-79
pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C... 292 2e-78
>sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subunit clpA homolog,
chloroplast precursor gi|419773|pir||S31164
endopeptidase Clp (EC 3.4.21.-) ATP-binding chain,
chloroplast [similarity] - garden pea
gi|169128|gb|AAA33680.1| nuclear encoded precursor to
chloroplast protein
Length = 922
Score = 311 bits (796), Expect = 4e-84
Identities = 153/171 (89%), Positives = 165/171 (96%)
Frame = +3
Query: 3 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLS 182
EYRKHIEKDP LERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTD+AL+AAA LS
Sbjct: 411 EYRKHIEKDPDLERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLS 470
Query: 183 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVKQIVKEKDEAVRNQDFEK 362
YQYISDRFLPDKAIDL+DEAGSRVRL+HAQLPEEA+ELDKEV++IVKEK+E VRNQDFEK
Sbjct: 471 YQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEK 530
Query: 363 AGELRDREMDLKTQISALIEKGKEMSKAESEAADGGPVVTEVDIQHIVASW 515
AGELRD+EMDLK QISALIEKGKEMSKAE+E AD GP+VTEVDIQHIV+SW
Sbjct: 531 AGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSW 581
>sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4B,
chloroplast precursor gi|100190|pir||B35905
endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd4B,
chloroplast [similarity] - tomato
gi|170435|gb|AAA34161.1| ATP-dependent protease (CD4B)
Length = 923
Score = 305 bits (782), Expect = 2e-82
Identities = 152/171 (88%), Positives = 163/171 (94%)
Frame = +3
Query: 3 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLS 182
EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTD+ LVAAA LS
Sbjct: 411 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQLS 470
Query: 183 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVKQIVKEKDEAVRNQDFEK 362
YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+EL+KE++QI KEK+EAVR QDFEK
Sbjct: 471 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEK 530
Query: 363 AGELRDREMDLKTQISALIEKGKEMSKAESEAADGGPVVTEVDIQHIVASW 515
AGELRDREMDLK QI+ALI+K KE+SKAESEAAD GP+VTE DIQHIV+SW
Sbjct: 531 AGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSW 581
>sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4A,
chloroplast precursor gi|100189|pir||A35905
endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cd4A,
chloroplast [similarity] - tomato
gi|170433|gb|AAA34160.1| ATP-dependent protease (CD4A)
Length = 926
Score = 296 bits (757), Expect = 1e-79
Identities = 149/172 (86%), Positives = 160/172 (92%), Gaps = 1/172 (0%)
Frame = +3
Query: 3 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLS 182
EYRKHIEKDPALERRFQPVKVPEP+VDETIQILKGLRERYEIHHKL YTD+A+ AAA LS
Sbjct: 413 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAKLS 472
Query: 183 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVKQIVKEKDEAVRNQDFEK 362
+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAREL+KE++QI KEK+EAVR QDFEK
Sbjct: 473 HQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEK 532
Query: 363 AGELRDREMDLKTQISALIEKGKEMSKAESEAAD-GGPVVTEVDIQHIVASW 515
AGELRDREMDLK QISALI+K KE SKAESEA D GP+VTE DIQHIV+SW
Sbjct: 533 AGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSW 584
>ref|NP_568746.1| ATP-dependent Clp protease ATP-binding subunit (ClpC1); protein id:
At5g50920.1, supported by cDNA: gi_20856955, supported
by cDNA: gi_2921157 [Arabidopsis thaliana]
gi|9758239|dbj|BAB08738.1| ATP-dependent Clp protease,
ATP-binding subunit [Arabidopsis thaliana]
gi|20856956|gb|AAM26692.1| AT5g50920/K3K7_7 [Arabidopsis
thaliana]
Length = 929
Score = 293 bits (751), Expect = 6e-79
Identities = 144/171 (84%), Positives = 160/171 (93%)
Frame = +3
Query: 3 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLS 182
EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTD++LVAAA LS
Sbjct: 413 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLS 472
Query: 183 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVKQIVKEKDEAVRNQDFEK 362
YQYISDRFLPDKAIDLIDEAGSRVRLRHAQ+PEEAREL+KE++QI KEK+EAVR QDFEK
Sbjct: 473 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEARELEKELRQITKEKNEAVRGQDFEK 532
Query: 363 AGELRDREMDLKTQISALIEKGKEMSKAESEAADGGPVVTEVDIQHIVASW 515
AG LRDRE++L+ ++SA+ KGKEMSKAESE + GP+VTE DIQHIV+SW
Sbjct: 533 AGTLRDREIELRAEVSAIQAKGKEMSKAESETGEEGPMVTESDIQHIVSSW 583
>pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast
[imported] - Arabidopsis thaliana
gi|2921158|gb|AAC04687.1| ClpC [Arabidopsis thaliana]
Length = 928
Score = 292 bits (747), Expect = 2e-78
Identities = 143/171 (83%), Positives = 159/171 (92%)
Frame = +3
Query: 3 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAHLS 182
EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTD++LVAAA LS
Sbjct: 412 EYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLS 471
Query: 183 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVKQIVKEKDEAVRNQDFEK 362
YQYISDRFLPDKAIDLIDEAGSRVRLRHAQ+PEE REL+KE++QI KEK+EAVR QDFEK
Sbjct: 472 YQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEVRELEKELRQITKEKNEAVRGQDFEK 531
Query: 363 AGELRDREMDLKTQISALIEKGKEMSKAESEAADGGPVVTEVDIQHIVASW 515
AG LRDRE++L+ ++SA+ KGKEMSKAESE + GP+VTE DIQHIV+SW
Sbjct: 532 AGTLRDREIELRAEVSAIQAKGKEMSKAESETGEEGPMVTESDIQHIVSSW 582
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,218,840
Number of Sequences: 1393205
Number of extensions: 8762013
Number of successful extensions: 37652
Number of sequences better than 10.0: 742
Number of HSP's better than 10.0 without gapping: 35250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37343
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
