Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002668A_C01 KMC002668A_c01
(741 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC49306.1| Rhizomucor circinelloides f. lusitanicus Rhizomuc... 33 5.5
gb|AAK38742.1| hydride transferase [Pimelobacter simplex] 33 5.5
ref|NP_187084.1| unknown protein; protein id: At3g04340.1 [Arabi... 32 7.2
gb|AAD29077.1| cytochrome b [Dactylurina staudingeri] 32 9.5
gb|EAA41618.1| GLP_291_37330_39351 [Giardia lamblia ATCC 50803] 32 9.5
>gb|AAC49306.1| Rhizomucor circinelloides f. lusitanicus Rhizomucor racemosus
putative transcription factor
Length = 353
Score = 32.7 bits (73), Expect = 5.5
Identities = 20/46 (43%), Positives = 24/46 (51%)
Frame = -3
Query: 610 LLLVLYFLVYLFFFCFGLVFVAHIGYRIWGLYF*PSG*REECIRGL 473
LLLVL+ V L C GL+F GY L+F S EC +GL
Sbjct: 304 LLLVLFTTVSLVRVCLGLIFSKATGYAFPSLFF--SNTMHECSQGL 347
>gb|AAK38742.1| hydride transferase [Pimelobacter simplex]
Length = 349
Score = 32.7 bits (73), Expect = 5.5
Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
Frame = -3
Query: 505 SG*REECIRGLGPSWAWRTRPNSHK--WPPPYAPI*G 401
SG E+C+ GLG WA R+ P S + W P AP G
Sbjct: 298 SGTPEDCVAGLGELWATRSGPASTRSTWARPSAPTRG 334
>ref|NP_187084.1| unknown protein; protein id: At3g04340.1 [Arabidopsis thaliana]
gi|6721152|gb|AAF26780.1|AC016829_4 unknown protein
[Arabidopsis thaliana]
Length = 1293
Score = 32.3 bits (72), Expect = 7.2
Identities = 25/97 (25%), Positives = 46/97 (46%), Gaps = 2/97 (2%)
Frame = +1
Query: 415 HKGAAICESWV*FSMPNLVQAL*CILLSTHWARN--TSPISYILYGPQIQAQNRKRTSKQ 588
+ A ES + F LV AL CI + R+ ++ I + ++R ++
Sbjct: 97 YNSAKTRESVIQFVTKPLVYALFCIAIGLSPIRSFQAPALAVPFVSDVIWKKKKERVREK 156
Query: 589 ESTILAVSHVFNDHSNKLSIKDWAYYFATIEVYKVEN 699
E + AV H F+D++ +L ++ + TIE+ + EN
Sbjct: 157 EVVLKAVDHEFSDYTRRL-LETVSVLLKTIEIVRKEN 192
>gb|AAD29077.1| cytochrome b [Dactylurina staudingeri]
Length = 173
Score = 32.0 bits (71), Expect = 9.5
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = -2
Query: 221 SSHFPHPVLIFILLWLHIPHEFLVHYASSKS*IQGKLRNRIKLVMNEFLLL 69
S HF P++IFIL+++H+ ++H + S + I KL N K++ N + +
Sbjct: 92 SIHFILPLIIFILVFIHL---MMLHMSGSTNPIHSKL-NIYKIIFNPYFYI 138
>gb|EAA41618.1| GLP_291_37330_39351 [Giardia lamblia ATCC 50803]
Length = 673
Score = 32.0 bits (71), Expect = 9.5
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = -1
Query: 372 IHLYNVRLVSPRSSLYEPIRELSSVLTCGLLQWLLVILIPRLIIL*MWHLFLSLSASSFD 193
I L+ +R+ + + +YEPI +++V L + + +I +I ++ LFL + + F
Sbjct: 139 IELWQIRIPNKQPVIYEPIWRVATVYASPLSYFSISSIIDSIIFPPIFLLFLVIFSRRF- 197
Query: 192 FHSPLVTYSP 163
P TYSP
Sbjct: 198 ---PSTTYSP 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,980,832
Number of Sequences: 1393205
Number of extensions: 14403857
Number of successful extensions: 32143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32136
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
