Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002664A_C01 KMC002664A_c01
(346 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_510472.1| PaTched Related PTR-7 (108.5 kD) (ptr-7) [Caeno... 33 0.93
ref|NP_473112.2| hypothetical protein [Plasmodium falciparum 3D7... 32 2.7
pir||H71602 protein with DnaJ domain (RESA-like) PFB0920w - mala... 32 2.7
ref|XP_139542.1| similar to zinc finger protein 42 [Mus musculus] 31 3.5
ref|ZP_00071369.1| hypothetical protein [Trichodesmium erythraeu... 30 6.0
>ref|NP_510472.1| PaTched Related PTR-7 (108.5 kD) (ptr-7) [Caenorhabditis elegans]
gi|7500275|pir||T21612 hypothetical protein F31F6.5 -
Caenorhabditis elegans gi|3892144|emb|CAA93751.1| C.
elegans PTR-7 protein (corresponding sequence F31F6.5)
[Caenorhabditis elegans]
Length = 955
Score = 33.1 bits (74), Expect = 0.93
Identities = 17/35 (48%), Positives = 19/35 (53%)
Frame = +3
Query: 84 TPPAYIDLAFYKSTWLQKLIAIRTGCFFFIFFLPL 188
T AYI L F+K+ WL LI G FF FL L
Sbjct: 906 TVDAYIILVFFKTIWLTMLIGAIHGLFFIPIFLSL 940
>ref|NP_473112.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503436|gb|AAC71973.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1034
Score = 31.6 bits (70), Expect = 2.7
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +3
Query: 177 FLPLSSPLFS*YKESFTTKYYIRTNSVSASYSTNVRTNFNYK 302
F +P+ Y++S TT YI N +SY T N+N K
Sbjct: 387 FGKFENPMCFNYEDSLTTSCYIDENKSDSSYETEENVNYNNK 428
>pir||H71602 protein with DnaJ domain (RESA-like) PFB0920w - malaria parasite
(Plasmodium falciparum)
Length = 1014
Score = 31.6 bits (70), Expect = 2.7
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +3
Query: 177 FLPLSSPLFS*YKESFTTKYYIRTNSVSASYSTNVRTNFNYK 302
F +P+ Y++S TT YI N +SY T N+N K
Sbjct: 367 FGKFENPMCFNYEDSLTTSCYIDENKSDSSYETEENVNYNNK 408
>ref|XP_139542.1| similar to zinc finger protein 42 [Mus musculus]
Length = 393
Score = 31.2 bits (69), Expect = 3.5
Identities = 16/35 (45%), Positives = 21/35 (59%), Gaps = 4/35 (11%)
Frame = +1
Query: 157 AVSFSFFFCPSHLRYFH----SIKNHLQPSTTSEL 249
A++F F FCP++L FH S+ N P TT EL
Sbjct: 156 ALTFLFLFCPTNLFDFHLGLTSLYNKANPFTTEEL 190
>ref|ZP_00071369.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 341
Score = 30.4 bits (67), Expect = 6.0
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = +3
Query: 114 YKSTWLQKLIAIRTGCFFFIFFLPLSSPLFS*YKESFTTKY 236
+K WL L+ +TG FF F L +P F + E F+ Y
Sbjct: 239 FKYLWLYGLVEPKTGDSFFYEFSHLDTPCFERFLELFSQTY 279
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,259,426
Number of Sequences: 1393205
Number of extensions: 5048371
Number of successful extensions: 13087
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13069
length of database: 448,689,247
effective HSP length: 90
effective length of database: 323,300,797
effective search space used: 7759219128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
