Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002657A_C01 KMC002657A_c01
(749 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565626.1| expressed protein; protein id: At2g26590.1, sup... 168 7e-41
gb|AAK49589.1|AF372873_1 At2g26590/T9J22.26 [Arabidopsis thalian... 167 1e-40
pir||T00992 hypothetical protein At2g26590 [imported] - Arabidop... 163 2e-39
gb|AAH10733.1|AAH10733 Unknown (protein for IMAGE:3897044) [Homo... 62 7e-09
ref|NP_008933.2| adhesion regulating molecule 1 precursor; M(r) ... 62 7e-09
>ref|NP_565626.1| expressed protein; protein id: At2g26590.1, supported by cDNA:
gi_13926226 [Arabidopsis thaliana]
gi|20196943|gb|AAC14506.2| expressed protein
[Arabidopsis thaliana]
Length = 300
Score = 168 bits (426), Expect = 7e-41
Identities = 88/123 (71%), Positives = 101/123 (81%), Gaps = 2/123 (1%)
Frame = -2
Query: 748 TSSGPVRLEDLQRILGNIGSADSII--DPDGGLGLGDILKPDLIMPLMEMLSLEQHLAPY 575
+SSGPV+L DLQRIL N+ I D D GL LGDILKP+LIMPL+E L +++ L+ +
Sbjct: 167 SSSGPVKLADLQRILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSH 226
Query: 574 LPEGKWSPEDILELLQSPPFRQQVDSFTYVLKTGQIDLSQFGIDPSKYKFTVLSFLEALE 395
LPEG EDILELLQSPPFRQQVD+FTYVL+TGQIDL+QFGIDPSKYKFTV SFLEALE
Sbjct: 227 LPEGHSRAEDILELLQSPPFRQQVDAFTYVLRTGQIDLTQFGIDPSKYKFTVDSFLEALE 286
Query: 394 DSV 386
DSV
Sbjct: 287 DSV 289
>gb|AAK49589.1|AF372873_1 At2g26590/T9J22.26 [Arabidopsis thaliana]
gi|27363336|gb|AAO11587.1| At2g26590/T9J22.26
[Arabidopsis thaliana]
Length = 300
Score = 167 bits (423), Expect = 1e-40
Identities = 88/123 (71%), Positives = 100/123 (80%), Gaps = 2/123 (1%)
Frame = -2
Query: 748 TSSGPVRLEDLQRILGNIGSADSII--DPDGGLGLGDILKPDLIMPLMEMLSLEQHLAPY 575
+SSGPV+L DLQRIL N+ I D D GL LGDILKP+LIMPL+E L +++ L+ +
Sbjct: 167 SSSGPVKLADLQRILNNLSGGPVGIAGDQDEGLALGDILKPELIMPLLEALPVQERLSSH 226
Query: 574 LPEGKWSPEDILELLQSPPFRQQVDSFTYVLKTGQIDLSQFGIDPSKYKFTVLSFLEALE 395
LPEG EDILELLQSPPFRQQVD+FTYVL+TGQIDL QFGIDPSKYKFTV SFLEALE
Sbjct: 227 LPEGHSRAEDILELLQSPPFRQQVDAFTYVLRTGQIDLIQFGIDPSKYKFTVDSFLEALE 286
Query: 394 DSV 386
DSV
Sbjct: 287 DSV 289
>pir||T00992 hypothetical protein At2g26590 [imported] - Arabidopsis thaliana
Length = 312
Score = 163 bits (413), Expect = 2e-39
Identities = 85/121 (70%), Positives = 98/121 (80%)
Frame = -2
Query: 748 TSSGPVRLEDLQRILGNIGSADSIIDPDGGLGLGDILKPDLIMPLMEMLSLEQHLAPYLP 569
+SSGPV+L DLQRIL N+ GL LGDILKP+LIMPL+E L +++ L+ +LP
Sbjct: 187 SSSGPVKLADLQRILNNLSGGPV------GLALGDILKPELIMPLLEALPVQERLSSHLP 240
Query: 568 EGKWSPEDILELLQSPPFRQQVDSFTYVLKTGQIDLSQFGIDPSKYKFTVLSFLEALEDS 389
EG EDILELLQSPPFRQQVD+FTYVL+TGQIDL+QFGIDPSKYKFTV SFLEALEDS
Sbjct: 241 EGHSRAEDILELLQSPPFRQQVDAFTYVLRTGQIDLTQFGIDPSKYKFTVDSFLEALEDS 300
Query: 388 V 386
V
Sbjct: 301 V 301
>gb|AAH10733.1|AAH10733 Unknown (protein for IMAGE:3897044) [Homo sapiens]
Length = 296
Score = 62.4 bits (150), Expect = 7e-09
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Frame = -2
Query: 736 PVRLEDLQRILGNIGSADSIIDPDGG--LGLGDILKPDLIMPLMEMLSLEQHLAPYLPEG 563
P++L DLQ IL + P GG + L +L P+++ P++ +++ L PYLP G
Sbjct: 150 PIQLSDLQSILATMNVPAG---PAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSG 206
Query: 562 KWSP---EDILELLQSPPFRQQVDSFTYVLKTGQID--LSQFGIDPSKYKFTVLSFLEAL 398
+ P ++I L SP F+Q + F+ L +GQ+ + QFG+ + +EA
Sbjct: 207 ESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAF 266
Query: 397 EDSVLKSVEPEESRQD 350
++ + +PE+ D
Sbjct: 267 AKAMQNNAKPEQKEGD 282
>ref|NP_008933.2| adhesion regulating molecule 1 precursor; M(r) 110,000 surface
antigen; 110 kDa cell membrane glycoprotein [Homo
sapiens] gi|28373194|ref|NP_783163.1| adhesion
regulating molecule 1 precursor; M(r) 110,000 surface
antigen; 110 kDa cell membrane glycoprotein [Homo
sapiens] gi|20141265|sp|Q16186|ADRM_HUMAN Adhesion
regulating molecule 1 precursor (110 kDa cell membrane
glycoprotein) (Gp110) gi|12274840|emb|CAC22308.1|
bA157P1.2 (cell membrane glycoprotein (surface antigen),
110000 M(r) (GP110)) [Homo sapiens]
gi|16878071|gb|AAH17245.1|AAH17245 Unknown (protein for
MGC:29536) [Homo sapiens]
Length = 407
Score = 62.4 bits (150), Expect = 7e-09
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 7/136 (5%)
Frame = -2
Query: 736 PVRLEDLQRILGNIGSADSIIDPDGG--LGLGDILKPDLIMPLMEMLSLEQHLAPYLPEG 563
P++L DLQ IL + P GG + L +L P+++ P++ +++ L PYLP G
Sbjct: 261 PIQLSDLQSILATMNVPAG---PAGGQQVDLASVLTPEIMAPILANADVQERLLPYLPSG 317
Query: 562 KWSP---EDILELLQSPPFRQQVDSFTYVLKTGQID--LSQFGIDPSKYKFTVLSFLEAL 398
+ P ++I L SP F+Q + F+ L +GQ+ + QFG+ + +EA
Sbjct: 318 ESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAF 377
Query: 397 EDSVLKSVEPEESRQD 350
++ + +PE+ D
Sbjct: 378 AKAMQNNAKPEQKEGD 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,885,134
Number of Sequences: 1393205
Number of extensions: 13381248
Number of successful extensions: 37789
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37751
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
