Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002647A_C01 KMC002647A_c01
(844 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187510.1| putative signal peptidase; protein id: At3g0898... 112 7e-24
emb|CAC09470.1| putative singal peptidase [Oryza sativa (indica ... 108 1e-22
gb|AAK98723.1|AC090485_2 Putative signal peptidase [Oryza sativa... 103 2e-21
gb|EAA04666.1| agCP3142 [Anopheles gambiae str. PEST] 85 2e-15
ref|NP_444352.1| inner mitochondrial membrane peptidase 2-like (... 76 7e-13
>ref|NP_187510.1| putative signal peptidase; protein id: At3g08980.1 [Arabidopsis
thaliana] gi|5923663|gb|AAD56314.1|AC009326_1 putative
signal peptidase [Arabidopsis thaliana]
gi|6403502|gb|AAF07842.1|AC010871_18 putative
mitochondrial inner membrane protease subunit 2
[Arabidopsis thaliana]
Length = 154
Score = 112 bits (280), Expect = 7e-24
Identities = 50/79 (63%), Positives = 61/79 (76%)
Frame = -3
Query: 803 SSPLHHKETHIKRISALPGEWIGAHHNYDVLKIPEAHCWVEGDNAASSLDSKSFGPIPLA 624
SSP H + +IKRI +PGEWI + DV+++PE HCWVEGDN SSLDS+SFGPIPL
Sbjct: 76 SSPTHFGDRYIKRIVGMPGEWISSSR--DVIRVPEGHCWVEGDNKTSSLDSRSFGPIPLG 133
Query: 623 LIRGRVTHVVWPPQRIGAV 567
LI+GRVT V+WPPQRI +
Sbjct: 134 LIQGRVTRVMWPPQRISKI 152
>emb|CAC09470.1| putative singal peptidase [Oryza sativa (indica cultivar-group)]
Length = 180
Score = 108 bits (269), Expect = 1e-22
Identities = 47/85 (55%), Positives = 60/85 (70%)
Frame = -3
Query: 800 SPLHHKETHIKRISALPGEWIGAHHNYDVLKIPEAHCWVEGDNAASSLDSKSFGPIPLAL 621
SP H+ +KR+ ALPG+WI ++ +IP HCWVEGDN S DS+S+GPIPL L
Sbjct: 91 SPTEHRSLVVKRLIALPGDWIQVPAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPIPLGL 150
Query: 620 IRGRVTHVVWPPQRIGAVKSTPPEG 546
++GRVTH+VWPP RIG V+ PEG
Sbjct: 151 MQGRVTHIVWPPNRIGPVERKMPEG 175
>gb|AAK98723.1|AC090485_2 Putative signal peptidase [Oryza sativa] gi|27261464|gb|AAN87730.1|
Putative signal peptidase [Oryza sativa (japonica
cultivar-group)]
Length = 152
Score = 103 bits (258), Expect = 2e-21
Identities = 53/113 (46%), Positives = 65/113 (56%), Gaps = 26/113 (23%)
Frame = -3
Query: 797 PLHHKETHIKRISALPGEWIGAHHNYDVLKIPEAHCWVEGDNAASSLDSKSFGP------ 636
P H+E +KR+ ALPGEW+ D++KIPE HCWVEGDNAA S DS+SFGP
Sbjct: 39 PSDHRELFVKRLIALPGEWMQLPGTPDIIKIPEGHCWVEGDNAACSWDSRSFGPEVDGIK 98
Query: 635 -------------------IPLALIRGRVTHVVWPPQRIGAVKSTPPEG-LSP 537
IPL LI+GRV HV+WPP +IG V + PE +SP
Sbjct: 99 DSMGGVRVSSASGMIGPPRIPLGLIKGRVAHVIWPPSKIGRVDTKMPENRISP 151
>gb|EAA04666.1| agCP3142 [Anopheles gambiae str. PEST]
Length = 187
Score = 84.7 bits (208), Expect = 2e-15
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -3
Query: 800 SPLHHKETHIKRISALPGEWIGA-HHNYDVLKIPEAHCWVEGDNAASSLDSKSFGPIPLA 624
SP + IKR+ AL G+ I + + +PE HCWVEGD+ +SLDS +FGP+ L
Sbjct: 84 SPKDPTQKIIKRVVALQGDVISTLGYKLPYVTVPEGHCWVEGDHTGNSLDSNTFGPVSLG 143
Query: 623 LIRGRVTHVVWPPQRIGAVKSTPPEGLSPSIVGS*CFCVASSKN 492
L+ R T +VWPP R + ST P+ P +G VASS++
Sbjct: 144 LVTARATQIVWPPSRWQQLPSTVPKTREPIAMGKRPAAVASSRS 187
>ref|NP_444352.1| inner mitochondrial membrane peptidase 2-like (S. cerevisiae) [Mus
musculus] gi|14030458|gb|AAK52906.1| inner mitochondrial
membrane peptidase 2 [Mus musculus]
Length = 175
Score = 75.9 bits (185), Expect = 7e-13
Identities = 36/86 (41%), Positives = 53/86 (60%), Gaps = 2/86 (2%)
Frame = -3
Query: 800 SPLHHKETHIKRISALPGEWIGA-HHNYDVLKIPEAHCWVEGDNAASSLDSKSFGPIPLA 624
SP + ++ IKR+ AL G+ + H ++K+P H WVEGD+ S DS SFGP+ L
Sbjct: 81 SPKNPEQKIIKRVIALEGDIVRTIGHKNGLVKVPRGHMWVEGDHHGHSFDSNSFGPVSLG 140
Query: 623 LIRGRVTHVVWPPQRIGAVKST-PPE 549
L+ TH++WPP+R ++S PPE
Sbjct: 141 LLHAHATHILWPPERWQRLESVLPPE 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 754,210,728
Number of Sequences: 1393205
Number of extensions: 16914738
Number of successful extensions: 34557
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 33191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34530
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44037481446
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
