Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002644A_C01 KMC002644A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172669.2| fumarylacetoacetate hydrolase-like protein; pro... 197 1e-49
ref|NP_000128.1| fumarylacetoacetase [Homo sapiens] gi|119778|sp... 159 3e-38
emb|CAA36016.1| fumarylacetoacetase (AA 1-349) [Homo sapiens] 159 3e-38
gb|AAB22822.1| fumarylacetoacetate hydrolase, FAH [mice, Peptide... 157 2e-37
pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hyd... 156 3e-37
>ref|NP_172669.2| fumarylacetoacetate hydrolase-like protein; protein id:
At1g12050.1, supported by cDNA: gi_20334819 [Arabidopsis
thaliana] gi|20334820|gb|AAM16166.1| At1g12050/F12F1_8
[Arabidopsis thaliana]
Length = 421
Score = 197 bits (500), Expect = 1e-49
Identities = 88/122 (72%), Positives = 103/122 (84%)
Frame = -3
Query: 658 YDISLEVHIKPVEHNDSSVVTRSNLKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGP 479
YDISLEV +KP +DS V+T+SN ++LYWT+TQQLAHHT+NGCNLRPGDLLGTGTISGP
Sbjct: 300 YDISLEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGP 359
Query: 478 EPESRGCLLELTWNGQNTLSLNGLDRKFLQDGDEVILTGHCKGNGYTVGFGNCSGKIVPP 299
EP+S GCLLELTWNGQ LSLNG + FL+DGD+V +G CKG+GY VGFG C+GKIVP
Sbjct: 360 EPDSYGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFSGVCKGDGYNVGFGTCTGKIVPS 419
Query: 298 AP 293
P
Sbjct: 420 PP 421
>ref|NP_000128.1| fumarylacetoacetase [Homo sapiens] gi|119778|sp|P16930|FAAA_HUMAN
Fumarylacetoacetase (Fumarylacetoacetate hydrolase)
(Beta-diketonase) (FAA) gi|106043|pir||A37926
fumarylacetoacetase (EC 3.7.1.2) - human
gi|182393|gb|AAA52422.1| fumarylacetoacetate hydrolase
gi|12803409|gb|AAH02527.1|AAH02527 fumarylacetoacetate
[Homo sapiens]
Length = 419
Score = 159 bits (402), Expect = 3e-38
Identities = 68/120 (56%), Positives = 95/120 (78%), Gaps = 1/120 (0%)
Frame = -3
Query: 658 YDISLEVHIKPVEHNDSSVVTRSNLKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGP 479
+DI+L V++K + ++ + +SN K++YWT+ QQL HH++NGCNLRPGDLL +GTISGP
Sbjct: 295 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 354
Query: 478 EPESRGCLLELTWNGQNTLSL-NGLDRKFLQDGDEVILTGHCKGNGYTVGFGNCSGKIVP 302
EPE+ G +LEL+W G + L NG RKFL DGDEVI+TG+C+G+GY +GFG C+GK++P
Sbjct: 355 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYCQGDGYRIGFGQCAGKVLP 414
>emb|CAA36016.1| fumarylacetoacetase (AA 1-349) [Homo sapiens]
Length = 349
Score = 159 bits (402), Expect = 3e-38
Identities = 68/120 (56%), Positives = 95/120 (78%), Gaps = 1/120 (0%)
Frame = -3
Query: 658 YDISLEVHIKPVEHNDSSVVTRSNLKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGP 479
+DI+L V++K + ++ + +SN K++YWT+ QQL HH++NGCNLRPGDLL +GTISGP
Sbjct: 225 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 284
Query: 478 EPESRGCLLELTWNGQNTLSL-NGLDRKFLQDGDEVILTGHCKGNGYTVGFGNCSGKIVP 302
EPE+ G +LEL+W G + L NG RKFL DGDEVI+TG+C+G+GY +GFG C+GK++P
Sbjct: 285 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYCQGDGYRIGFGQCAGKVLP 344
>gb|AAB22822.1| fumarylacetoacetate hydrolase, FAH [mice, Peptide, 419 aa]
Length = 419
Score = 157 bits (396), Expect = 2e-37
Identities = 68/120 (56%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
Frame = -3
Query: 658 YDISLEVHIKPVEHNDSSVVTRSNLKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGP 479
+DI+L V +K + ++ + RSN KH+YWT+ QQL HH++NGCNLRPGDLL +GTISG
Sbjct: 295 FDINLSVSLKGERMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGS 354
Query: 478 EPESRGCLLELTWNGQNTLSL-NGLDRKFLQDGDEVILTGHCKGNGYTVGFGNCSGKIVP 302
+PES G +LEL+W G + + G R FL DGDEVI+TGHC+G+GY VGFG C+GK++P
Sbjct: 355 DPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLP 414
>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
gi|8569275|pdb|1QCO|B Chain B, Crystal Structure Of
Fumarylacetoacetate Hydrolase Complexed With Fumarate
And Acetoacetate
Length = 423
Score = 156 bits (394), Expect = 3e-37
Identities = 68/120 (56%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
Frame = -3
Query: 658 YDISLEVHIKPVEHNDSSVVTRSNLKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGP 479
+DI+L V +K + ++ + RSN KH+YWT+ QQL HH++NGCNLRPGDLL +GTISG
Sbjct: 297 FDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGS 356
Query: 478 EPESRGCLLELTWNGQNTLSL-NGLDRKFLQDGDEVILTGHCKGNGYTVGFGNCSGKIVP 302
+PES G +LEL+W G + + G R FL DGDEVI+TGHC+G+GY VGFG C+GK++P
Sbjct: 357 DPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLP 416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,906,552
Number of Sequences: 1393205
Number of extensions: 11962282
Number of successful extensions: 27485
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 26481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27427
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
