Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002641A_C02 KMC002641A_c02
(1140 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD00708.1| ethylene-responsive element binding protein homol... 165 1e-39
gb|AAD09248.1| EREBP-3 homolog [Stylosanthes hamata] 164 3e-39
gb|AAC49771.1| AP2 domain containing protein RAP2.5 [Arabidopsis... 150 5e-35
ref|NP_188139.1| ethylene responsive element binding factor 4 (A... 150 5e-35
gb|AAO34705.1| ethylene response factor 3 [Lycopersicon esculentum] 141 2e-32
>gb|AAD00708.1| ethylene-responsive element binding protein homolog [Stylosanthes
hamata]
Length = 238
Score = 165 bits (418), Expect = 1e-39
Identities = 109/208 (52%), Positives = 126/208 (60%), Gaps = 13/208 (6%)
Frame = -2
Query: 995 KIHKPSN-NATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQ 819
K++ SN EVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE+AARAYDAAAR+
Sbjct: 11 KVNGKSNAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAARE 70
Query: 818 FRGPKAKTNFPQSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERD--ITRGGGVV 645
FRGPKAKTNFP S D N N VVV N N+SPSQSSTVESS+ +RD V
Sbjct: 71 FRGPKAKTNFPFPDSDDINNN-NIVVVKN--NNRSPSQSSTVESSSRDRDSYSAAAATAV 127
Query: 644 VDRFPF-LPLHPQQL---MPFSGGGDVVYTA------PVRPVIFLDPASQAEFFAQRFPV 495
D P L L PQ+L PF + + ++LD +A +
Sbjct: 128 ADSSPLDLNLAPQELDSPDPFGSHSTQPFAVFPGGMPAAKQALYLDAVLRASMASHG--- 184
Query: 494 RFESGPVDFTGMFGGGIQSDSDSSSVVD 411
+F G + G QSDSDSSSV+D
Sbjct: 185 QFGFG---YNRPAAAGAQSDSDSSSVID 209
>gb|AAD09248.1| EREBP-3 homolog [Stylosanthes hamata]
Length = 239
Score = 164 bits (414), Expect = 3e-39
Identities = 106/219 (48%), Positives = 124/219 (56%), Gaps = 22/219 (10%)
Frame = -2
Query: 1001 KSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAR 822
K+ K + EVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAE+AARAYDAAAR
Sbjct: 6 KTPAVKVNAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDAAAR 65
Query: 821 QFRGPKAKTNFPQSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERD---ITRGGG 651
+FRGPKAKTNFP S D N+ N++VV N+SPSQSSTVESS+ +RD
Sbjct: 66 EFRGPKAKTNFPFPDSDDINSNNNNIVVVK-NNNRSPSQSSTVESSSRDRDSYSAAAAAT 124
Query: 650 VVVD-------------------RFPFLPLHPQQLMPFSGGGDVVYTAPVRPVIFLDPAS 528
V D RFPF Q F GG + ++LD
Sbjct: 125 AVADSSPLDLNLAPAGAGFAGSIRFPF----QQPFAVFPGG-----MPAAKQALYLDAVL 175
Query: 527 QAEFFAQRFPVRFESGPVDFTGMFGGGIQSDSDSSSVVD 411
+A + +F G + G QSDSDSSSV+D
Sbjct: 176 RASMASHG---QFGFG-YNRPAAAAAGAQSDSDSSSVID 210
>gb|AAC49771.1| AP2 domain containing protein RAP2.5 [Arabidopsis thaliana]
Length = 213
Score = 150 bits (378), Expect = 5e-35
Identities = 97/194 (50%), Positives = 111/194 (57%), Gaps = 5/194 (2%)
Frame = -2
Query: 977 NNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAK 798
NNA E+ +RGVRKRPWGRYAAEIRDPGKK+RVWLGTFDTAEEAARAYD AAR FRG KAK
Sbjct: 18 NNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAK 77
Query: 797 TNFPQSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERDITRGGGVVVDRFPFLPL 618
TNFP + P +SPSQSST++ ++P +VV +
Sbjct: 78 TNFPTFLELSDQKVPTGFA-------RSPSQSSTLDCASPPT-------LVVPSATAGNV 123
Query: 617 HPQ-QLMPFSGGGDVVYTAPV-RPVIFLDPASQAEFFAQRFP---VRFESGPVDFTGMFG 453
PQ +L GGG Y P+ RPV FLD + P F S V
Sbjct: 124 PPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNVGRGQPPPVTSAFRSPVVHVATKMA 183
Query: 452 GGIQSDSDSSSVVD 411
G QSDSDSSSVVD
Sbjct: 184 CGAQSDSDSSSVVD 197
>ref|NP_188139.1| ethylene responsive element binding factor 4 (AtERF4); protein id:
At3g15210.1, supported by cDNA: 22775., supported by
cDNA: gi_2281634, supported by cDNA: gi_3434972
[Arabidopsis thaliana] gi|7531110|sp|O80340|ERF4_ARATH
Ethylene responsive element binding factor 4 (AtERF4)
gi|25453552|pir||T52019 ethylene responsive element
binding factor 4 [validated] - Arabidopsis thaliana
gi|3434973|dbj|BAA32421.1| ethylene responsive element
binding factor 4 [Arabidopsis thaliana]
gi|9294248|dbj|BAB02150.1| ethylene responsive element
binding factor 4 -like protein [Arabidopsis thaliana]
gi|21592357|gb|AAM64308.1| ethylene responsive element
binding factor AtERF4 [Arabidopsis thaliana]
gi|22655162|gb|AAM98171.1| ethylene responsive element
binding factor 4 (AtERF4) [Arabidopsis thaliana]
Length = 222
Score = 150 bits (378), Expect = 5e-35
Identities = 97/194 (50%), Positives = 111/194 (57%), Gaps = 5/194 (2%)
Frame = -2
Query: 977 NNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAK 798
NNA E+ +RGVRKRPWGRYAAEIRDPGKK+RVWLGTFDTAEEAARAYD AAR FRG KAK
Sbjct: 18 NNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAK 77
Query: 797 TNFPQSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERDITRGGGVVVDRFPFLPL 618
TNFP + P +SPSQSST++ ++P +VV +
Sbjct: 78 TNFPTFLELSDQKVPTGFA-------RSPSQSSTLDCASPPT-------LVVPSATAGNV 123
Query: 617 HPQ-QLMPFSGGGDVVYTAPV-RPVIFLDPASQAEFFAQRFP---VRFESGPVDFTGMFG 453
PQ +L GGG Y P+ RPV FLD + P F S V
Sbjct: 124 PPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNVGRGQPPPVTSAFRSPVVHVATKMA 183
Query: 452 GGIQSDSDSSSVVD 411
G QSDSDSSSVVD
Sbjct: 184 CGAQSDSDSSSVVD 197
>gb|AAO34705.1| ethylene response factor 3 [Lycopersicon esculentum]
Length = 222
Score = 141 bits (356), Expect = 2e-32
Identities = 102/220 (46%), Positives = 121/220 (54%), Gaps = 11/220 (5%)
Frame = -2
Query: 1037 ATTAAATTAVSAKSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTA 858
A TA A ++ SK EVH+RGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTA
Sbjct: 9 AVTAMAMVNLNGISK---------EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTA 59
Query: 857 EEAARAYDAAARQFRGPKAKTNFPQSPSPDNNTGPNDVVVA-NVKANQSPSQSSTVESST 681
EEAARAYD AAR+FRG KAKTNFP+ D+ A + N+SP Q+STVESS+
Sbjct: 60 EEAARAYDNAAREFRGAKAKTNFPKLEMEKE----EDLKFAVKNEINRSPGQTSTVESSS 115
Query: 680 PERDITRGGGVVVDRFPFLPL----------HPQQLMPFSGGGDVVYTAPVRPVIFLDPA 531
P V+VD L L H P SGGG +T V+ V +
Sbjct: 116 P---------VMVDSSSPLDLSLCGSIGGFNHHTVKFPSSGGG---FTGSVQAV---NRM 160
Query: 530 SQAEFFAQRFPVRFESGPVDFTGMFGGGIQSDSDSSSVVD 411
E A+ ++ E GGG DSDSS+V+D
Sbjct: 161 YYIEALARAGVIKLEQIGRKRLDYLGGG---DSDSSTVID 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,053,206,335
Number of Sequences: 1393205
Number of extensions: 28783601
Number of successful extensions: 359265
Number of sequences better than 10.0: 6511
Number of HSP's better than 10.0 without gapping: 138844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250447
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 69732809988
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
