Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002634A_C01 KMC002634A_c01
(788 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173800.2| unknown protein; protein id: At1g23880.1, suppo... 325 4e-88
pir||T01495 hypothetical protein F17O7.19 - Arabidopsis thaliana... 288 8e-77
gb|AAF87138.1|AC002423_3 T23E23.5 [Arabidopsis thaliana] 283 3e-75
ref|NP_177185.2| unknown protein; protein id: At1g70280.1, suppo... 280 2e-74
ref|NP_196993.1| putative protein; protein id: At5g14890.1 [Arab... 261 8e-69
>ref|NP_173800.2| unknown protein; protein id: At1g23880.1, supported by cDNA:
gi_18700090, supported by cDNA: gi_20856012 [Arabidopsis
thaliana] gi|18700091|gb|AAL77657.1| At1g23880/T23E23_8
[Arabidopsis thaliana] gi|20856013|gb|AAM26643.1|
At1g23880/T23E23_8 [Arabidopsis thaliana]
Length = 545
Score = 325 bits (834), Expect = 4e-88
Identities = 157/216 (72%), Positives = 193/216 (88%), Gaps = 2/216 (0%)
Frame = +1
Query: 145 LLVGTLSVSAAPSTTSPAKIVSGFVSNAVPAFTKWVWSL--KATTRTAVSSRSMMKFESG 318
+L+ + V++APS+TSPAKIV+ F+SN + KW+WSL K TT+TAV ++SM+KFE+G
Sbjct: 72 ILLFSAFVASAPSSTSPAKIVNSFISNHGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENG 131
Query: 319 YSVETVFDGSKLGVEPYAVEVLPNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGY 498
YSVETV DGSKLG+EPY+++VL NGELLILDS NSN+Y+ISSSLSLYSRP+LV GS EGY
Sbjct: 132 YSVETVLDGSKLGIEPYSIQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLVTGSPEGY 191
Query: 499 SGHVDGKLREARMNQPKGITVDDRGNIYVADTMNMAIRKISDSGITTIAGGKWSRGGGHV 678
GHVDG+LR+AR+N PKG+TVDDRGNIYVADT+N AIRKIS++G+TTIAGGK RGGGHV
Sbjct: 192 PGHVDGRLRDARLNNPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIAGGKMVRGGGHV 251
Query: 679 DGPSEEAKFSDDFDVVYVGSSCSLLIVDRGNRAIRE 786
DGPSE+AKFS+DFDVVY+GSSCSLL++DRGN+AIRE
Sbjct: 252 DGPSEDAKFSNDFDVVYLGSSCSLLVIDRGNQAIRE 287
>pir||T01495 hypothetical protein F17O7.19 - Arabidopsis thaliana
gi|3176691|gb|AAC18814.1| Contains homology to
serine/threonine protein kinase gb|X99618 from
Mycobacterium tuberculosis. ESTs gb|F14403, gb|F14404,
and gb|N96730 come from this gene. [Arabidopsis
thaliana]
Length = 493
Score = 288 bits (736), Expect = 8e-77
Identities = 147/222 (66%), Positives = 174/222 (78%)
Frame = +1
Query: 121 LLLGFTLQLLVGTLSVSAAPSTTSPAKIVSGFVSNAVPAFTKWVWSLKATTRTAVSSRSM 300
L+L + LL G VS+APS SPA +++RSM
Sbjct: 6 LVLSILILLLSGI--VSSAPSANSPA---------------------------TIATRSM 36
Query: 301 MKFESGYSVETVFDGSKLGVEPYAVEVLPNGELLILDSANSNLYRISSSLSLYSRPKLVA 480
+KFE+GYSVETVFDGSKLG+EPY++EVLPNGELLILDS NSN+Y+ISSSLSLYSRP+LV
Sbjct: 37 VKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRPRLVT 96
Query: 481 GSAEGYSGHVDGKLREARMNQPKGITVDDRGNIYVADTMNMAIRKISDSGITTIAGGKWS 660
GS EGY GHVDG+LR+A++N PKG+TVDDRGNIYVADT+N AIRKIS+ G+TTIAGGK
Sbjct: 97 GSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKTV 156
Query: 661 RGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLIVDRGNRAIRE 786
R GGHVDGPSE+AKFS+DFDVVYVGSSCSLL++DRGN+AIRE
Sbjct: 157 RNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIRE 198
>gb|AAF87138.1|AC002423_3 T23E23.5 [Arabidopsis thaliana]
Length = 493
Score = 283 bits (723), Expect = 3e-75
Identities = 138/192 (71%), Positives = 169/192 (87%), Gaps = 1/192 (0%)
Frame = +1
Query: 214 FVSNAVPAFTKWVWSLKATTRTA-VSSRSMMKFESGYSVETVFDGSKLGVEPYAVEVLPN 390
F+ + F+ +V S ++T A V ++SM+KFE+GYSVETV DGSKLG+EPY+++VL N
Sbjct: 7 FLGIIILLFSAFVASAPSSTSPATVPTKSMVKFENGYSVETVLDGSKLGIEPYSIQVLSN 66
Query: 391 GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARMNQPKGITVDDR 570
GELLILDS NSN+Y+ISSSLSLYSRP+LV GS EGY GHVDG+LR+AR+N PKG+TVDDR
Sbjct: 67 GELLILDSQNSNIYQISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDARLNNPKGLTVDDR 126
Query: 571 GNIYVADTMNMAIRKISDSGITTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSL 750
GNIYVADT+N AIRKIS++G+TTIAGGK RGGGHVDGPSE+AKFS+DFDVVY+GSSCSL
Sbjct: 127 GNIYVADTVNNAIRKISEAGVTTIAGGKMVRGGGHVDGPSEDAKFSNDFDVVYLGSSCSL 186
Query: 751 LIVDRGNRAIRE 786
L++DRGN+AIRE
Sbjct: 187 LVIDRGNQAIRE 198
>ref|NP_177185.2| unknown protein; protein id: At1g70280.1, supported by cDNA:
gi_17065223 [Arabidopsis thaliana]
gi|17065224|gb|AAL32766.1| Unknown protein [Arabidopsis
thaliana] gi|21387163|gb|AAM47985.1| unknown protein
[Arabidopsis thaliana]
Length = 447
Score = 280 bits (715), Expect = 2e-74
Identities = 132/163 (80%), Positives = 153/163 (92%)
Frame = +1
Query: 298 MMKFESGYSVETVFDGSKLGVEPYAVEVLPNGELLILDSANSNLYRISSSLSLYSRPKLV 477
M+KFE+GYSVETVFDGSKLG+EPY++EVLPNGELLILDS NSN+Y+ISSSLSLYSRP+LV
Sbjct: 1 MVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRPRLV 60
Query: 478 AGSAEGYSGHVDGKLREARMNQPKGITVDDRGNIYVADTMNMAIRKISDSGITTIAGGKW 657
GS EGY GHVDG+LR+A++N PKG+TVDDRGNIYVADT+N AIRKIS+ G+TTIAGGK
Sbjct: 61 TGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKT 120
Query: 658 SRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLIVDRGNRAIRE 786
R GGHVDGPSE+AKFS+DFDVVYVGSSCSLL++DRGN+AIRE
Sbjct: 121 VRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIRE 163
>ref|NP_196993.1| putative protein; protein id: At5g14890.1 [Arabidopsis thaliana]
gi|11357718|pir||T51434 hypothetical protein F2G14_10 -
Arabidopsis thaliana gi|9755656|emb|CAC01808.1| putative
protein [Arabidopsis thaliana]
Length = 733
Score = 261 bits (667), Expect = 8e-69
Identities = 128/204 (62%), Positives = 165/204 (80%), Gaps = 8/204 (3%)
Frame = +1
Query: 199 KIVSGFVSNAVPAFTKWVWSLKA------TTRTAVSSRSMMKFESGYSVETVFDGSKLGV 360
+IVSG V+N KW+WSL+ TT++ VSSRSM+K+ESGY++ETVFDGSKLG+
Sbjct: 11 EIVSGLVTNVASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYESGYNMETVFDGSKLGI 70
Query: 361 EPYAVEVLPNG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARM 537
EPYA+EV PNG EL++LDS NSN+++IS LS Y +PKL++GS EGY+GHVDGKL+EARM
Sbjct: 71 EPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKLLSGSQEGYTGHVDGKLKEARM 130
Query: 538 NQPKGITVDDRGNIYVADTMNMAIRKISDSGITTI-AGGKWSRGGGHVDGPSEEAKFSDD 714
N+P+G+ +DDRGNIYVADT+NMAIRKISD G++TI AGG+WS G E +FSDD
Sbjct: 131 NRPRGLAMDDRGNIYVADTINMAIRKISDDGVSTIAAGGRWSGG-----SKEESMRFSDD 185
Query: 715 FDVVYVGSSCSLLIVDRGNRAIRE 786
FD++YV SSCSLL++DRGN+ I+E
Sbjct: 186 FDLIYVSSSCSLLVIDRGNQLIKE 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 764,924,592
Number of Sequences: 1393205
Number of extensions: 18803564
Number of successful extensions: 55400
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 51626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55311
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39495713322
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
