Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002630A_C01 KMC002630A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566172.1| putative plant adhesion molecule; protein id: A... 112 3e-24
ref|NP_197097.1| plant adhesion molecule 1 (PAM1); protein id: A... 106 1e-22
gb|AAM97143.1| plant adhesion molecule PAM1 [Arabidopsis thaliana] 106 1e-22
gb|AAN40023.1| putative 40S ribosomal protein [Zea mays] 44 9e-04
ref|NP_085321.1| orf, hypothetical [Shigella flexneri] gi|249918... 33 2.0
>ref|NP_566172.1| putative plant adhesion molecule; protein id: At3g02460.1,
supported by cDNA: 38942. [Arabidopsis thaliana]
gi|21593435|gb|AAM65402.1| putative plant adhesion
molecule [Arabidopsis thaliana]
Length = 353
Score = 112 bits (279), Expect = 3e-24
Identities = 53/63 (84%), Positives = 57/63 (90%)
Frame = -2
Query: 476 GLALLKYCHDDLIKLPFEKLIHALKNFPEDAMNPDTLLPLAYSIKISKRLEELKEEYEKK 297
GLALLKYC D+L+KLPFEKLIHALK FPEDAMNPDTLLPLAYSIK+SKRLEEL EY+K
Sbjct: 287 GLALLKYCQDELVKLPFEKLIHALKTFPEDAMNPDTLLPLAYSIKVSKRLEELTLEYQKT 346
Query: 296 NGK 288
N K
Sbjct: 347 NAK 349
>ref|NP_197097.1| plant adhesion molecule 1 (PAM1); protein id: At5g15930.1,
supported by cDNA: 39585., supported by cDNA: gi_3511222
[Arabidopsis thaliana] gi|11358624|pir||T51376 plant
adhesion molecule 1 (PAM1) - Arabidopsis thaliana
gi|3511223|gb|AAC33763.1| plant adhesion molecule 1
[Arabidopsis thaliana] gi|9755639|emb|CAC01792.1| plant
adhesion molecule 1 (PAM1) [Arabidopsis thaliana]
gi|21593500|gb|AAM65467.1| plant adhesion molecule 1
(PAM1) [Arabidopsis thaliana]
Length = 356
Score = 106 bits (265), Expect = 1e-22
Identities = 48/69 (69%), Positives = 63/69 (90%)
Frame = -2
Query: 476 GLALLKYCHDDLIKLPFEKLIHALKNFPEDAMNPDTLLPLAYSIKISKRLEELKEEYEKK 297
GLALLK+CHDDL+KLPFE+L+HAL+NFPEDAM+PDTLLPLAYSIK+SKRLEE+K++ +K
Sbjct: 284 GLALLKHCHDDLLKLPFEELMHALRNFPEDAMDPDTLLPLAYSIKVSKRLEEMKQDCDKA 343
Query: 296 NGKISRSGE 270
K +++ +
Sbjct: 344 VAKPTQTAK 352
>gb|AAM97143.1| plant adhesion molecule PAM1 [Arabidopsis thaliana]
Length = 298
Score = 106 bits (265), Expect = 1e-22
Identities = 48/69 (69%), Positives = 63/69 (90%)
Frame = -2
Query: 476 GLALLKYCHDDLIKLPFEKLIHALKNFPEDAMNPDTLLPLAYSIKISKRLEELKEEYEKK 297
GLALLK+CHDDL+KLPFE+L+HAL+NFPEDAM+PDTLLPLAYSIK+SKRLEE+K++ +K
Sbjct: 226 GLALLKHCHDDLLKLPFEELMHALRNFPEDAMDPDTLLPLAYSIKVSKRLEEMKQDCDKA 285
Query: 296 NGKISRSGE 270
K +++ +
Sbjct: 286 VAKPTQTAK 294
>gb|AAN40023.1| putative 40S ribosomal protein [Zea mays]
Length = 309
Score = 43.9 bits (102), Expect = 9e-04
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = -2
Query: 440 IKLPFEKLIHALKNFPEDAMNPDTLLPLAYSIK 342
+KL FEKL++AL+ FPE+A++PD L LA+S K
Sbjct: 143 VKLRFEKLLYALRYFPEEAIDPDVSLSLAFSFK 175
>ref|NP_085321.1| orf, hypothetical [Shigella flexneri]
gi|2499180|sp|P55794|YSPU_SHIFL Hypothetical 10.4 kDa
protein in spaT 3'region (ORF-11) (SPA-ORF11)
gi|538807|pir||C38908 hypothetical protein 11 (spa40 3'
region) - Shigella flexneri plasmid pMYSH6000
gi|303898|dbj|BAA02834.1| ORF 11 [Shigella flexneri]
gi|12329102|emb|CAC05833.1| ORF131b, length = 89 aa,
unknown [Shigella flexneri]
gi|13310653|gb|AAK18477.1|AF348706_166 orf, hypothetical
[Shigella flexneri]
Length = 89
Score = 32.7 bits (73), Expect = 2.0
Identities = 18/48 (37%), Positives = 24/48 (49%)
Frame = +1
Query: 307 YSSLSSSKRLDILIEYAKGNNVSGFIASSGKFFKACISFSNGSLIKSS 450
YSS + L + +YAK N + S + CIS SNG+ KSS
Sbjct: 22 YSSCNVKTLLYSIRDYAKSVNDHEILTESNRLLSHCISDSNGAFFKSS 69
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,737,843
Number of Sequences: 1393205
Number of extensions: 7299010
Number of successful extensions: 20291
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20283
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
