Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002628A_C01 KMC002628A_c01
(868 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase Fr... 313 2e-84
ref|NP_191320.1| adenylosuccinate synthetase; protein id: At3g57... 313 2e-84
gb|AAM61686.1| adenylosuccinate synthetase [Arabidopsis thaliana] 313 2e-84
pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase Fr... 280 2e-74
sp|O24396|PURA_WHEAT Adenylosuccinate synthetase, chloroplast pr... 280 2e-74
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana gi|7546403|pdb|1DJ2|B
Chain B, Structures Of Adenylosuccinate Synthetase From
Triticum Aestivum And Arabidopsis Thaliana
Length = 443
Score = 313 bits (802), Expect = 2e-84
Identities = 149/171 (87%), Positives = 163/171 (95%)
Frame = -1
Query: 847 SPRVVGDLIGVVKAYTTRVGSGPFPTENLGSGGDLLRFTGQEFGTTTGRPRRCGWLDIVA 668
+P VVGDLIGVVKAYTTRVGSGPFPTENLG+GGDLLR GQEFGTTTGRPRRCGWLDIVA
Sbjct: 273 APSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVA 332
Query: 667 LRYSCQINGFSSLNLTKLDVLSELDEIQLGVSYKHVDGTPIQSFPSDLSLLEQLKVEYEV 488
L++SCQINGF+SLNLTKLDVLS+L+EIQLGV+YK DGTP++SFP DL LLE+L VEYEV
Sbjct: 333 LKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEV 392
Query: 487 LPGWKSDISSIRNYSDLPKAAQQYVERIEELVGVPIHYIGVGPGRDALIFK 335
LPGWKSDISS+RNYSDLPKAAQQYVERIEELVGVPIHYIG+GPGRDALI+K
Sbjct: 393 LPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK 443
>ref|NP_191320.1| adenylosuccinate synthetase; protein id: At3g57610.1, supported by
cDNA: 13259., supported by cDNA: gi_15451051, supported
by cDNA: gi_1616656, supported by cDNA: gi_20148264
[Arabidopsis thaliana] gi|2500026|sp|Q96529|PURA_ARATH
Adenylosuccinate synthetase, chloroplast precursor
(IMP--aspartate ligase) (AdSS) (AMPSase)
gi|7438029|pir||T06759 adenylosuccinate synthase (EC
6.3.4.4) - Arabidopsis thaliana
gi|1616657|gb|AAB16828.1| adenylosuccinate synthetase
gi|4678286|emb|CAB41194.1| adenylosuccinate synthetase
[Arabidopsis thaliana] gi|15451052|gb|AAK96797.1|
adenylosuccinate synthetase [Arabidopsis thaliana]
gi|20148265|gb|AAM10023.1| adenylosuccinate synthetase
[Arabidopsis thaliana]
Length = 490
Score = 313 bits (802), Expect = 2e-84
Identities = 149/171 (87%), Positives = 163/171 (95%)
Frame = -1
Query: 847 SPRVVGDLIGVVKAYTTRVGSGPFPTENLGSGGDLLRFTGQEFGTTTGRPRRCGWLDIVA 668
+P VVGDLIGVVKAYTTRVGSGPFPTENLG+GGDLLR GQEFGTTTGRPRRCGWLDIVA
Sbjct: 320 APSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVA 379
Query: 667 LRYSCQINGFSSLNLTKLDVLSELDEIQLGVSYKHVDGTPIQSFPSDLSLLEQLKVEYEV 488
L++SCQINGF+SLNLTKLDVLS+L+EIQLGV+YK DGTP++SFP DL LLE+L VEYEV
Sbjct: 380 LKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEV 439
Query: 487 LPGWKSDISSIRNYSDLPKAAQQYVERIEELVGVPIHYIGVGPGRDALIFK 335
LPGWKSDISS+RNYSDLPKAAQQYVERIEELVGVPIHYIG+GPGRDALI+K
Sbjct: 440 LPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK 490
>gb|AAM61686.1| adenylosuccinate synthetase [Arabidopsis thaliana]
Length = 490
Score = 313 bits (802), Expect = 2e-84
Identities = 149/171 (87%), Positives = 163/171 (95%)
Frame = -1
Query: 847 SPRVVGDLIGVVKAYTTRVGSGPFPTENLGSGGDLLRFTGQEFGTTTGRPRRCGWLDIVA 668
+P VVGDLIGVVKAYTTRVGSGPFPTENLG+GGDLLR GQEFGTTTGRPRRCGWLDIVA
Sbjct: 320 APSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVA 379
Query: 667 LRYSCQINGFSSLNLTKLDVLSELDEIQLGVSYKHVDGTPIQSFPSDLSLLEQLKVEYEV 488
L++SCQINGF+SLNLTKLDVLS+L+EIQLGV+YK DGTP++SFP DL LLE+L VEYEV
Sbjct: 380 LKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEV 439
Query: 487 LPGWKSDISSIRNYSDLPKAAQQYVERIEELVGVPIHYIGVGPGRDALIFK 335
LPGWKSDISS+RNYSDLPKAAQQYVERIEELVGVPIHYIG+GPGRDALI+K
Sbjct: 440 LPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK 490
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana gi|7546405|pdb|1DJ3|B
Chain B, Structures Of Adenylosuccinate Synthetase From
Triticum Aestivum And Arabidopsis Thaliana
Length = 442
Score = 280 bits (717), Expect = 2e-74
Identities = 134/171 (78%), Positives = 151/171 (87%)
Frame = -1
Query: 847 SPRVVGDLIGVVKAYTTRVGSGPFPTENLGSGGDLLRFTGQEFGTTTGRPRRCGWLDIVA 668
+PRV+GDLIGVVKAYTTRVGSGPFPTE LG GD+LR G EFGTTTGRPRRCGWLDIVA
Sbjct: 272 APRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVA 331
Query: 667 LRYSCQINGFSSLNLTKLDVLSELDEIQLGVSYKHVDGTPIQSFPSDLSLLEQLKVEYEV 488
L+Y C INGFSSLNLTKLDVLS L EI+LGVSY +DG +QSFP DL LEQ++V YEV
Sbjct: 332 LKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEV 391
Query: 487 LPGWKSDISSIRNYSDLPKAAQQYVERIEELVGVPIHYIGVGPGRDALIFK 335
LPGW SDISS+R+YS+LP+AA++YVERIEEL GVP+HYIGVGPGRDALI+K
Sbjct: 392 LPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 442
>sp|O24396|PURA_WHEAT Adenylosuccinate synthetase, chloroplast precursor (IMP--aspartate
ligase) (AdSS) (AMPSase) gi|7438028|pir||T06792
adenylosuccinate synthase (EC 6.3.4.4) - wheat
(fragment) gi|1616659|gb|AAB16829.1| adenylosuccinate
synthetase
Length = 476
Score = 280 bits (717), Expect = 2e-74
Identities = 134/171 (78%), Positives = 151/171 (87%)
Frame = -1
Query: 847 SPRVVGDLIGVVKAYTTRVGSGPFPTENLGSGGDLLRFTGQEFGTTTGRPRRCGWLDIVA 668
+PRV+GDLIGVVKAYTTRVGSGPFPTE LG GD+LR G EFGTTTGRPRRCGWLDIVA
Sbjct: 306 APRVIGDLIGVVKAYTTRVGSGPFPTELLGEEGDVLRKAGMEFGTTTGRPRRCGWLDIVA 365
Query: 667 LRYSCQINGFSSLNLTKLDVLSELDEIQLGVSYKHVDGTPIQSFPSDLSLLEQLKVEYEV 488
L+Y C INGFSSLNLTKLDVLS L EI+LGVSY +DG +QSFP DL LEQ++V YEV
Sbjct: 366 LKYCCDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEV 425
Query: 487 LPGWKSDISSIRNYSDLPKAAQQYVERIEELVGVPIHYIGVGPGRDALIFK 335
LPGW SDISS+R+YS+LP+AA++YVERIEEL GVP+HYIGVGPGRDALI+K
Sbjct: 426 LPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVGPGRDALIYK 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 769,505,599
Number of Sequences: 1393205
Number of extensions: 17670521
Number of successful extensions: 45052
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 42601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44793
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46267227342
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
