KMC002617A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC002617A_C01 KMC002617A_c01
aaaagaataaaactgtGTAATGCTCCTCTTTATTTGATGATCACAAACTTTTTAAAGCTT
TATTTTGTTTTCGGTCAACAACTTTCTTTTTTTTTTTGGTCAATGGTCAACAACTTTCTA
AAGCTTGATATAACCATTTTTTTATCATCCACTCCATACTCCAGTGATTGATGGAATTTT
TATAACTCCAATAAGCCCATCCAAATGTTGCTTGCCCAAAAACATCTAACTGGGCCTTGG
CGAATCTTTGTAACTCTTCTTTGGTTCCCCCATCGAGTTTCCACTCAGCAACCCATTCAC
CTACAAATACCAGAGGACCATTTGAAGCTGTAACAGAATTCAAGTCCGATTGACGGCCGC
TGTAAATGAAATCAATGTTCTGCTGGGCATTCAAGGTTTTAAAAAAATCTTCAAAAAGGC
TGTAGTAGTGAACATCTATCACAGATCGTGTAAGGTCATTGGCAACATTGAAGAATTCTT
TAGGGTCTGAGGTACCTAGCCTATTTGAAAACACAACATAAGCTGTGGAGGAGTGTTTGC
GCACTGCTTCATATCCAGCCTTGTAGTACTTGTTTAGGCTCTCTAGAGTGGCACCAGGTG
AGCGAGGCTCATTTAAAAGTTCAACTGCGTAAAGGCTTGGTCTGTTTTAATACCTGGCAG
TTAGGAAGTCTATAATTTGAACAGTTTGTTGGATGGTTTCATCTGATCCCCATTCTTGTG
AACCATCTCTTGAAAAGCTATGCTCAAAGCCATTTTG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002617A_C01 KMC002617A_c01
         (757 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM08614.1|AC107314_5 Putative Glucan 1,3-beta-glucosidase pr...   259  3e-68
gb|AAM08620.1|AC107314_11 Putative Glucan 1,3-beta-glucosidase p...   253  2e-66
gb|AAG36689.1| immunodominant antigen Gp43 [Paracoccidioides bra...    79  7e-14
gb|AAG36670.1| immunodominant antigen Gp43 [Paracoccidioides bra...    79  7e-14
gb|AAG36668.1| immunodominant antigen Gp43 [Paracoccidioides bra...    79  7e-14

>gb|AAM08614.1|AC107314_5 Putative Glucan 1,3-beta-glucosidase precursor [Oryza sativa
           (japonica cultivar-group)]
           gi|20043013|gb|AAM08821.1|AC113335_1 Putative Glucan
           1,3-beta-glucosidase precursor [Oryza sativa (japonica
           cultivar-group)]
          Length = 510

 Score =  259 bits (662), Expect = 3e-68
 Identities = 125/207 (60%), Positives = 154/207 (74%), Gaps = 1/207 (0%)
 Frame = -1

Query: 757 QNGFEHSFSRDGSQEWGS-DETIQQTVQIIDFLTARY*NRPSLYAVELLNEPRSPGATLE 581
           QN FEHS SRDGSQ+WG+ D  I QTVQ+IDFLT RY + PSL AVELLNEP +PG TL 
Sbjct: 297 QNPFEHSASRDGSQDWGTTDANIAQTVQVIDFLTHRYASSPSLLAVELLNEPLAPGVTLP 356

Query: 580 SLNKYYKAGYEAVRKHSSTAYVVFSNRLGTSDPKEFFNVANDLTRSVIDVHYYSLFEDFF 401
           +L +YYK GY AVRK++STAYVV SNRL  S+  E    A     +V+DVHYY+LF   F
Sbjct: 357 ALMRYYKDGYNAVRKYTSTAYVVMSNRLSASNT-ELLGFAAGFPGAVLDVHYYNLFTSSF 415

Query: 400 KTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWVAEWKLDGGTKEELQRFAKAQLDV 221
             L   QNID++ + R  +L++VT  NGPL FVGEWVAEW + G + ++ QRFA+AQLDV
Sbjct: 416 NGLTVDQNIDYVRTNRSDELSTVTRPNGPLTFVGEWVAEWNVQGASNQDYQRFAQAQLDV 475

Query: 220 FGQATFGWAYWSYKNSINHWSMEWMIK 140
           +G+ATFGWAYW+YKN  NHWSM+W I+
Sbjct: 476 YGRATFGWAYWTYKNVNNHWSMQWNIQ 502

>gb|AAM08620.1|AC107314_11 Putative Glucan 1,3-beta-glucosidase precursor [Oryza sativa
            (japonica cultivar-group)]
          Length = 1449

 Score =  253 bits (647), Expect = 2e-66
 Identities = 120/208 (57%), Positives = 154/208 (73%), Gaps = 2/208 (0%)
 Frame = -1

Query: 757  QNGFEHSFSRDGSQEWGSDET-IQQTVQIIDFLTARY*NRPSLYAVELLNEPRSPGATLE 581
            QN +EHS +RDGS EWG+ +T I QTVQIIDFL +RY N PSL A+ELLNEP  P   LE
Sbjct: 1234 QNHWEHSATRDGSLEWGTTDTSITQTVQIIDFLASRYANSPSLLAIELLNEPWGPDVPLE 1293

Query: 580  SLNKYYKAGYEAVRKHSSTAYVVFSNRLGTSDPKEFFNVANDLTRSVIDVHYYSLF-EDF 404
             L KYY+  Y  VRK+++ AYV+ SNRL      E  + A+     VIDVHYY+LF +D 
Sbjct: 1294 KLKKYYEDAYNVVRKYTAKAYVIMSNRLAGESNTELLDFASRFPGVVIDVHYYNLFNDDT 1353

Query: 403  FKTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWVAEWKLDGGTKEELQRFAKAQLD 224
            FK LN +QNI+F+ + R+++ +++T    PL FVGEW AEWK++G +KEE QRFA+AQLD
Sbjct: 1354 FKNLNVEQNIEFVKNSRKAEFSNITKQKSPLTFVGEWAAEWKVNGASKEEYQRFAQAQLD 1413

Query: 223  VFGQATFGWAYWSYKNSINHWSMEWMIK 140
            V+G+ATFGWAYW++KN  NHWS+EWMIK
Sbjct: 1414 VYGRATFGWAYWNFKNVNNHWSLEWMIK 1441

 Score =  243 bits (620), Expect = 2e-63
 Identities = 115/207 (55%), Positives = 150/207 (71%), Gaps = 1/207 (0%)
 Frame = -1

Query: 757  QNGFEHSFSRDGSQEWG-SDETIQQTVQIIDFLTARY*NRPSLYAVELLNEPRSPGATLE 581
            QN  +HS SRDGS EWG S   I QTV +IDFL +RY    SL A+ELLNEP +P   ++
Sbjct: 754  QNRLDHSASRDGSLEWGTSAANIAQTVGVIDFLASRYAKSSSLLAIELLNEPLAPDVPVD 813

Query: 580  SLNKYYKAGYEAVRKHSSTAYVVFSNRLGTSDPKEFFNVANDLTRSVIDVHYYSLFEDFF 401
            +L KYY+  Y AVRK++  AYV+ S R+ + DP EF +VA+ L  +VIDVHYY+L+   F
Sbjct: 814  TLTKYYQDAYNAVRKYTLQAYVILSTRM-SGDPTEFLSVASSLFGAVIDVHYYNLYNSMF 872

Query: 400  KTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWVAEWKLDGGTKEELQRFAKAQLDV 221
                 +QNI+F+ + R SD+N+VT  N PL FVGEWVAEW +D  +KE+ Q FA+AQLD+
Sbjct: 873  DNYTVEQNINFVRNNRSSDINTVTKQNVPLTFVGEWVAEWYVDNASKEDYQNFAQAQLDL 932

Query: 220  FGQATFGWAYWSYKNSINHWSMEWMIK 140
            +G+ATFGW+YW++KN  NHWSMEWMIK
Sbjct: 933  YGKATFGWSYWTFKNVKNHWSMEWMIK 959

 Score =  241 bits (614), Expect = 1e-62
 Identities = 115/207 (55%), Positives = 146/207 (69%), Gaps = 1/207 (0%)
 Frame = -1

Query: 757 QNGFEHSFSRDGSQEWGS-DETIQQTVQIIDFLTARY*NRPSLYAVELLNEPRSPGATLE 581
           QN +EHS SRDGSQ WG+ DETI QTVQ+IDFL +RY   PSL AVELLNEP +P  +  
Sbjct: 276 QNPWEHSGSRDGSQTWGTTDETIIQTVQVIDFLASRYAKSPSLLAVELLNEPLAPKVSAG 335

Query: 580 SLNKYYKAGYEAVRKHSSTAYVVFSNRLGTSDPKEFFNVANDLTRSVIDVHYYSLFEDFF 401
            L KYY+  Y AVRK++S AYV+ SN +      E    A     +V DVHYY++F   F
Sbjct: 336 MLKKYYQDAYNAVRKYTSDAYVIMSNPINADYSNEILQFAGGFFGAVFDVHYYNMFNGSF 395

Query: 400 KTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWVAEWKLDGGTKEELQRFAKAQLDV 221
               A+ NI F+ + R ++L SVT  NGPL +VGEWVAEWK++  ++E+ +RFA+AQLDV
Sbjct: 396 DNTTAEWNIQFVRNDRSAELRSVTKQNGPLTYVGEWVAEWKVNNASEEDYKRFAQAQLDV 455

Query: 220 FGQATFGWAYWSYKNSINHWSMEWMIK 140
           + QATFGWAYWS+K+  NHWS+EWMIK
Sbjct: 456 YSQATFGWAYWSFKHVQNHWSLEWMIK 482

>gb|AAG36689.1| immunodominant antigen Gp43 [Paracoccidioides brasiliensis]
          Length = 416

 Score = 79.0 bits (193), Expect = 7e-14
 Identities = 71/258 (27%), Positives = 111/258 (42%), Gaps = 48/258 (18%)
 Frame = -1

Query: 757 QNGFEHSFSRDGSQEWGSDETIQQTVQIIDFLTARY*NRPSLY-AVELLNEPRSPGATLE 581
           QNGF++S  R G+  W   +TI+QT+  I  L  RY NR  +  ++EL+N+P  PG    
Sbjct: 159 QNGFDNS-GRRGAINWQKGDTIKQTLVAIHTLAIRYANRTDVVDSIELVNKPSIPGGVQV 217

Query: 580 SLNK-YYKAGYEAVRKHSSTAYVVFSNRL-------GTSDPKEFFNVANDLTRSVIDVHY 425
           SL K YYK GY+ VR   ST  V  S+         G   PK + NV        +D ++
Sbjct: 218 SLLKEYYKDGYDIVRDIDSTVGVAISDASLPPRIWNGFLAPKAYKNV-------FLDTYH 270

Query: 424 YSLFEDFFKTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWV--------------- 290
             +F+D F+T    Q++    S     L     ++ PL+ V EW                
Sbjct: 271 NQVFDDIFRTFTIDQHVKLACSLPHDRLR---GADKPLI-VKEWSGAMTDCAMYLNGRGI 326

Query: 289 -----------------------AEWKLDGGTKEELQRFAKAQLDVFGQATFGWAYWSYK 179
                                  +  +L    K + +R+ +AQLD F +   GW +W++K
Sbjct: 327 GSRFDGSFHSGKPSGACGARSKGSSSELSAQQKRDTRRYIEAQLDAF-EVGAGWYFWTWK 385

Query: 178 -NSINHWSMEWMIKKWLY 128
                 W M+ ++ + L+
Sbjct: 386 TEGAPGWDMQDLLNQKLF 403

>gb|AAG36670.1| immunodominant antigen Gp43 [Paracoccidioides brasiliensis]
           gi|11496179|gb|AAG36671.1| immunodominant antigen Gp43
           [Paracoccidioides brasiliensis]
          Length = 416

 Score = 79.0 bits (193), Expect = 7e-14
 Identities = 71/258 (27%), Positives = 111/258 (42%), Gaps = 48/258 (18%)
 Frame = -1

Query: 757 QNGFEHSFSRDGSQEWGSDETIQQTVQIIDFLTARY*NRPSLY-AVELLNEPRSPGATLE 581
           QNGF++S  R G+  W   +TI+QT+  I  L  RY NR  +  ++EL+N+P  PG    
Sbjct: 159 QNGFDNS-GRRGAINWQKGDTIKQTLVAIHTLAIRYANRTDVVDSIELVNKPSIPGGVQV 217

Query: 580 SLNK-YYKAGYEAVRKHSSTAYVVFSNRL-------GTSDPKEFFNVANDLTRSVIDVHY 425
           SL K YYK GY+ VR   ST  V  S+         G   PK + NV        +D ++
Sbjct: 218 SLLKEYYKDGYDIVRDIDSTVGVAISDASLPPRIWNGFLAPKAYKNV-------FLDTYH 270

Query: 424 YSLFEDFFKTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWV--------------- 290
             +F+D F+T    Q++    S     L     ++ PL+ V EW                
Sbjct: 271 NQVFDDIFRTFTIDQHVKLACSLPHDRLR---GADKPLI-VKEWSGAMTDCAMYLNGRGI 326

Query: 289 -----------------------AEWKLDGGTKEELQRFAKAQLDVFGQATFGWAYWSYK 179
                                  +  +L    K + +R+ +AQLD F +   GW +W++K
Sbjct: 327 GSRFDGSFRSGKPSGACGARSKGSSSELSAQQKRDTRRYIEAQLDAF-EVGAGWYFWTWK 385

Query: 178 -NSINHWSMEWMIKKWLY 128
                 W M+ ++ + L+
Sbjct: 386 TEGAPGWDMQDLLNQKLF 403

>gb|AAG36668.1| immunodominant antigen Gp43 [Paracoccidioides brasiliensis]
          Length = 416

 Score = 79.0 bits (193), Expect = 7e-14
 Identities = 72/254 (28%), Positives = 114/254 (44%), Gaps = 44/254 (17%)
 Frame = -1

Query: 757 QNGFEHSFSRDGSQEWGSDETIQQTVQIIDFLTARY*NRPSLY-AVELLNEPRSPGATLE 581
           QNGF++S  R G+  W   +TI+QT+  I  L  RY NR  +  ++EL+N+P  PG    
Sbjct: 159 QNGFDNSGHR-GAINWQKGDTIKQTLVAIHTLAIRYANRTDVVDSIELVNKPSIPGGVQV 217

Query: 580 SLNK-YYKAGYEAVRKHSSTAYVVFSNRLGTSDPKEFFN--VANDLTRSV-IDVHYYSLF 413
           SL K YYK GY+ VR   ST  V  S+    S P   +N  +A    R+V +D ++  +F
Sbjct: 218 SLLKEYYKDGYDIVRDIDSTVGVAISD---ASLPPRIWNGFLAPKAYRNVFLDTYHNQVF 274

Query: 412 EDFFKTLNAQQNIDFIYSGRQSDLNSVTASNGPLVFVGEWV------------------- 290
           +D F+T    Q++    S     L     ++ PL+ V EW                    
Sbjct: 275 DDIFRTFTIDQHVKLACSLPHDRLR---GADKPLI-VKEWSGAMTDCAMYLNGRGIGSRF 330

Query: 289 -------------------AEWKLDGGTKEELQRFAKAQLDVFGQATFGWAYWSYK-NSI 170
                              +  +L    K + +R+ +AQLD F +   GW +W++K    
Sbjct: 331 DGSFHSGKPSGACGARSKGSSSELSAQQKRDTRRYIEAQLDAF-EVGAGWYFWTWKTEGA 389

Query: 169 NHWSMEWMIKKWLY 128
             W M+ ++ + L+
Sbjct: 390 PGWDMQDLLNQKLF 403

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,913,313
Number of Sequences: 1393205
Number of extensions: 13858261
Number of successful extensions: 37932
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 36530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37856
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MR003g05_f BP076181 1 368
2 MR003g10_f BP076186 17 408
3 MWM112a10_f AV766505 17 525
4 GENf087a12 BP062021 18 397
5 MR094f01_f BP083238 36 442
6 MR088c01_f BP082744 99 449
7 MR023e01_f BP077753 100 579
8 MR023d12_f BP077752 104 471
9 MWM167h10_f AV767325 250 758




Lotus japonicus
Kazusa DNA Research Institute