Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002613A_C01 KMC002613A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564109.1| expressed protein; protein id: At1g20270.1, sup... 115 4e-25
gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Ara... 113 1e-24
ref|NP_179363.1| putative prolyl 4-hydroxylase, alpha subunit; p... 110 8e-24
gb|AAM65040.1| putative prolyl 4-hydroxylase, alpha subunit [Ara... 109 2e-23
gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|2213652... 86 3e-16
>ref|NP_564109.1| expressed protein; protein id: At1g20270.1, supported by cDNA:
13404. [Arabidopsis thaliana] gi|25513547|pir||D86336
F14O10.12 protein - Arabidopsis thaliana
gi|9558598|gb|AAF88161.1|AC026234_12 Contains similarity
to a prolyl 4-hydroxylase alpha subunit protein from
Gallus gallus gi|212530. [Arabidopsis thaliana]
Length = 287
Score = 115 bits (287), Expect = 4e-25
Identities = 47/63 (74%), Positives = 57/63 (89%)
Frame = -3
Query: 523 SAVPWWNELSDCGKKGLSIKPKRGDALLFWSMKPDTTADTSSLHGGCPVIKGDKWSCTKW 344
S+VPW+NELS+CGKKGLS+KP+ GDALLFWSM+PD T D +SLHGGCPVI+G+KWS TKW
Sbjct: 220 SSVPWYNELSECGKKGLSVKPRMGDALLFWSMRPDATLDPTSLHGGCPVIRGNKWSSTKW 279
Query: 343 MRL 335
M +
Sbjct: 280 MHV 282
>gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
Length = 287
Score = 113 bits (283), Expect = 1e-24
Identities = 46/63 (73%), Positives = 57/63 (90%)
Frame = -3
Query: 523 SAVPWWNELSDCGKKGLSIKPKRGDALLFWSMKPDTTADTSSLHGGCPVIKGDKWSCTKW 344
S+VPW+NELS+CGKKGLS+KP+ GDALLFWSM+PD T D +SLHGGCPVI+G+KWS TKW
Sbjct: 220 SSVPWYNELSECGKKGLSVKPRMGDALLFWSMRPDATLDPTSLHGGCPVIRGNKWSSTKW 279
Query: 343 MRL 335
+ +
Sbjct: 280 IHV 282
>ref|NP_179363.1| putative prolyl 4-hydroxylase, alpha subunit; protein id:
At2g17720.1, supported by cDNA: 36054. [Arabidopsis
thaliana] gi|25411813|pir||F84555 similar to prolyl
4-hydroxylase alpha subunit [imported] - Arabidopsis
thaliana
Length = 291
Score = 110 bits (276), Expect = 8e-24
Identities = 45/63 (71%), Positives = 54/63 (85%)
Frame = -3
Query: 523 SAVPWWNELSDCGKKGLSIKPKRGDALLFWSMKPDTTADTSSLHGGCPVIKGDKWSCTKW 344
SAVPWWNELS CGK+GLS+ PK+ DALLFW+M+PD + D SSLHGGCPV+KG+KWS TKW
Sbjct: 224 SAVPWWNELSKCGKEGLSVLPKKRDALLFWNMRPDASLDPSSLHGGCPVVKGNKWSSTKW 283
Query: 343 MRL 335
+
Sbjct: 284 FHV 286
>gb|AAM65040.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
Length = 291
Score = 109 bits (273), Expect = 2e-23
Identities = 45/63 (71%), Positives = 53/63 (83%)
Frame = -3
Query: 523 SAVPWWNELSDCGKKGLSIKPKRGDALLFWSMKPDTTADTSSLHGGCPVIKGDKWSCTKW 344
SAVPWWNELS CGK+GLS+ PK DALLFW+M+PD + D SSLHGGCPV+KG+KWS TKW
Sbjct: 224 SAVPWWNELSKCGKEGLSVLPKXRDALLFWNMRPDASLDPSSLHGGCPVVKGNKWSSTKW 283
Query: 343 MRL 335
+
Sbjct: 284 FHV 286
>gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|22136524|gb|AAM91340.1|
unknown protein [Arabidopsis thaliana]
Length = 298
Score = 85.9 bits (211), Expect = 3e-16
Identities = 33/56 (58%), Positives = 47/56 (83%)
Frame = -3
Query: 502 ELSDCGKKGLSIKPKRGDALLFWSMKPDTTADTSSLHGGCPVIKGDKWSCTKWMRL 335
+LSDC K+G+++KP++GDALLF+++ PD D SLHGGCPVI+G+KWS TKW+ +
Sbjct: 190 DLSDCAKRGIAVKPRKGDALLFFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIHV 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,819,230
Number of Sequences: 1393205
Number of extensions: 9353844
Number of successful extensions: 22525
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 21816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22508
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
