Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002611A_C02 KMC002611A_c02
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564597.1| Expressed protein; protein id: At1g51740.1, sup... 192 2e-48
sp|P59277|SY81_ARATH Syntaxin 81 (AtSYP81) gi|21554610|gb|AAM636... 192 2e-48
pir||D96556 hypothetical protein F19C24.5 [imported] - Arabidops... 110 1e-23
gb|AAH21362.1| Similar to syntaxin 18 [Mus musculus] 86 4e-16
ref|NP_058626.1| syntaxin 18 [Homo sapiens] gi|17369347|sp|Q9P2W... 84 9e-16
>ref|NP_564597.1| Expressed protein; protein id: At1g51740.1, supported by cDNA:
258340. [Arabidopsis thaliana]
gi|27754572|gb|AAO22733.1| unknown protein [Arabidopsis
thaliana] gi|28393877|gb|AAO42346.1| unknown protein
[Arabidopsis thaliana]
Length = 310
Score = 192 bits (488), Expect = 2e-48
Identities = 97/123 (78%), Positives = 112/123 (90%), Gaps = 1/123 (0%)
Frame = -2
Query: 556 GDMELREPDELRSEPLRVQQQ-LLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMS 380
G+ E EPDE++++P R+QQQ LLDDET+ LQVEL+NLLD ++TETKMVEMSALNHLM+
Sbjct: 188 GNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEMSALNHLMA 247
Query: 379 THVLQQAHQIEYLYEQAVEATKNVEFGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLD 200
THVLQQA QIE+LY+QAVEATKNVE GNKELSQAIQRNSSSRTFLLLF FVLTFS++FLD
Sbjct: 248 THVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFFFVLTFSVLFLD 307
Query: 199 WYS 191
WYS
Sbjct: 308 WYS 310
>sp|P59277|SY81_ARATH Syntaxin 81 (AtSYP81) gi|21554610|gb|AAM63632.1| unknown
[Arabidopsis thaliana]
Length = 310
Score = 192 bits (488), Expect = 2e-48
Identities = 97/123 (78%), Positives = 112/123 (90%), Gaps = 1/123 (0%)
Frame = -2
Query: 556 GDMELREPDELRSEPLRVQQQ-LLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMS 380
G+ E EPDE++++P R+QQQ LLDDET+ LQVEL+NLLD ++TETKMVEMSALNHLM+
Sbjct: 188 GNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEMSALNHLMA 247
Query: 379 THVLQQAHQIEYLYEQAVEATKNVEFGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLD 200
THVLQQA QIE+LY+QAVEATKNVE GNKELSQAIQRNSSSRTFLLLF FVLTFS++FLD
Sbjct: 248 THVLQQAQQIEFLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFFFVLTFSVLFLD 307
Query: 199 WYS 191
WYS
Sbjct: 308 WYS 310
>pir||D96556 hypothetical protein F19C24.5 [imported] - Arabidopsis thaliana
gi|12321686|gb|AAG50888.1|AC025294_26 hypothetical
protein [Arabidopsis thaliana]
Length = 896
Score = 110 bits (275), Expect = 1e-23
Identities = 60/103 (58%), Positives = 81/103 (78%), Gaps = 4/103 (3%)
Frame = -2
Query: 556 GDMELREPDELRSEPLRVQQQ-LLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMS 380
G+ E EPDE++++P R+QQQ LLDDET+ LQVEL+NLLD ++TETKMVEMSALNHLM+
Sbjct: 188 GNSESIEPDEIQAQPRRLQQQQLLDDETQALQVELSNLLDGARQTETKMVEMSALNHLMA 247
Query: 379 THVLQQAHQIEYLYEQAVEATKNVEFGNKELSQAI---QRNSS 260
THVLQQA QIE+LY+Q+ + +N+E N + + + +RN S
Sbjct: 248 THVLQQAQQIEFLYDQSND-DRNLEAINASVGRLVWVRRRNGS 289
>gb|AAH21362.1| Similar to syntaxin 18 [Mus musculus]
Length = 308
Score = 85.5 bits (210), Expect = 4e-16
Identities = 42/113 (37%), Positives = 74/113 (65%)
Frame = -2
Query: 532 DELRSEPLRVQQQLLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMSTHVLQQAHQ 353
DEL E + Q+ + E + L E+ +L D V++ E K+VE+S L + + VLQQ +
Sbjct: 198 DELSPEEI----QMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQETE 253
Query: 352 IEYLYEQAVEATKNVEFGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWY 194
I+ +++ V AT+N++ GN+++ +AI+ N+ R ++L FL + +FS++FLDWY
Sbjct: 254 IDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWY 306
>ref|NP_058626.1| syntaxin 18 [Homo sapiens] gi|17369347|sp|Q9P2W9|STXH_HUMAN
Syntaxin 18 gi|7707424|dbj|BAA95213.1| syntaxin 18 [Homo
sapiens] gi|15779092|gb|AAH14613.1|AAH14613 Similar to
syntaxin 18 [Homo sapiens]
Length = 335
Score = 84.3 bits (207), Expect = 9e-16
Identities = 41/113 (36%), Positives = 74/113 (65%)
Frame = -2
Query: 532 DELRSEPLRVQQQLLDDETRVLQVELTNLLDTVQETETKMVEMSALNHLMSTHVLQQAHQ 353
DEL E + Q+ + E + L E+ +L D V++ E ++VE+S L + + VLQQ +
Sbjct: 225 DELSPEEI----QMFEQENQRLIGEMNSLFDEVRQIEGRVVEISRLQEIFTEKVLQQEAE 280
Query: 352 IEYLYEQAVEATKNVEFGNKELSQAIQRNSSSRTFLLLFLFVLTFSIIFLDWY 194
I+ +++ V AT+N++ GN+++ +AI+ N+ R ++L FL + +FS++FLDWY
Sbjct: 281 IDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWY 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,733,993
Number of Sequences: 1393205
Number of extensions: 8494670
Number of successful extensions: 21714
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 20988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21689
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
