Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002610A_C01 KMC002610A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200611.1| SPP30 - like protein; protein id: At5g58030.1, ... 212 3e-54
gb|AAD34459.1|AF136010_1 SPP30 [Solanum chacoense] 209 3e-53
dbj|BAB39401.1| SPP30 homolog [Oryza sativa (japonica cultivar-g... 202 3e-51
ref|NP_596451.1| similar to yeast BET3 involved in targeting and... 118 8e-26
gb|EAA00628.1| agCP9489 [Anopheles gambiae str. PEST] 103 3e-21
>ref|NP_200611.1| SPP30 - like protein; protein id: At5g58030.1, supported by cDNA:
269675. [Arabidopsis thaliana]
gi|9759528|dbj|BAB10994.1|
gb|AAD34459.1~gene_id:K21L19.2~similar to unknown
protein [Arabidopsis thaliana]
gi|21555061|gb|AAM63766.1| SPP30-like protein
[Arabidopsis thaliana] gi|28466921|gb|AAO44069.1|
At5g58030 [Arabidopsis thaliana]
Length = 195
Score = 212 bits (540), Expect = 3e-54
Identities = 104/119 (87%), Positives = 113/119 (94%)
Frame = -2
Query: 669 KGKQKGDTAVGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKD 490
KG ++ +GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVN+FISIPKD
Sbjct: 75 KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
Query: 489 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILIKFAEEVLRREARL 313
MGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPR TILIKFA+EVL+REARL
Sbjct: 135 MGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILIKFADEVLKREARL 193
>gb|AAD34459.1|AF136010_1 SPP30 [Solanum chacoense]
Length = 194
Score = 209 bits (532), Expect = 3e-53
Identities = 103/120 (85%), Positives = 111/120 (91%)
Frame = -2
Query: 669 KGKQKGDTAVGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKD 490
KG ++ +GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVN+FISIPKD
Sbjct: 75 KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
Query: 489 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILIKFAEEVLRREARLG 310
MG FNCG+FVAGIVRGVL++AGFPAVVTAHFVP+EGQ RPR TILIKFAEEVLRREA LG
Sbjct: 135 MGAFNCGSFVAGIVRGVLENAGFPAVVTAHFVPVEGQHRPRTTILIKFAEEVLRREATLG 194
>dbj|BAB39401.1| SPP30 homolog [Oryza sativa (japonica cultivar-group)]
gi|20804659|dbj|BAB92348.1| SPP30 homolog [Oryza sativa
(japonica cultivar-group)]
Length = 192
Score = 202 bits (514), Expect = 3e-51
Identities = 100/120 (83%), Positives = 110/120 (91%)
Frame = -2
Query: 669 KGKQKGDTAVGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKD 490
KG ++ +GILSF+HSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVN+FIS+PKD
Sbjct: 75 KGNRRETRLLGILSFIHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISVPKD 134
Query: 489 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILIKFAEEVLRREARLG 310
MG FNCGAFVAGI GVL++AGFPAVVTAHFVP+EGQQRPR TILIKFAEEVL+REAR G
Sbjct: 135 MGAFNCGAFVAGI--GVLENAGFPAVVTAHFVPIEGQQRPRTTILIKFAEEVLQREARFG 192
>ref|NP_596451.1| similar to yeast BET3 involved in targeting and fusion of ER to
Golgi transport vesicles [Schizosaccharomyces pombe]
gi|11282567|pir||T50333 homolog to yeast BET3 involved
in targeting and fusion of ER to Golgi transport
vesicles [imported] - fission yeast
(Schizosaccharomyces pombe) gi|7106062|emb|CAB75995.1|
similar to yeast BET3 involved in targeting and fusion
of ER to Golgi transport vesicles [Schizosaccharomyces
pombe]
Length = 209
Score = 118 bits (295), Expect = 8e-26
Identities = 61/111 (54%), Positives = 75/111 (66%)
Frame = -2
Query: 642 VGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAF 463
+GIL ++HS+VWK LFGK ADSLEK E DEYMI + L+NKFIS+PK+M NC A+
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159
Query: 462 VAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILIKFAEEVLRREARLG 310
+AGI+ G LDSA FP +AH VP+ Q R ILIK V+ RE LG
Sbjct: 160 LAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVILIKLDPSVIAREEVLG 209
>gb|EAA00628.1| agCP9489 [Anopheles gambiae str. PEST]
Length = 183
Score = 103 bits (256), Expect = 3e-21
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = -2
Query: 642 VGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAF 463
+ +L F+ +T+WK LFGK AD LE T+ E Y I EKE LVNKFIS+PKD G+ NC F
Sbjct: 79 INMLLFIKTTLWKTLFGKEADKLEHATDDECTYYIIEKEPLVNKFISVPKDKGSLNCAVF 138
Query: 462 VAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILIKFAEEVLRREARL 313
VAGIV+ VL + GF V+AH+ T ++KF + V+ R+ +L
Sbjct: 139 VAGIVQAVLSNCGFTCQVSAHW-------HKGTTYMVKFEDHVISRDKQL 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,102,203
Number of Sequences: 1393205
Number of extensions: 11667957
Number of successful extensions: 33698
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 32266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33649
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
