Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002609A_C03 KMC002609A_c03
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42305.1| unknown protein [Arabidopsis thaliana] 40 0.024
ref|NP_187096.1| unknown protein; protein id: At3g04460.1 [Arabi... 40 0.024
gb|AAK27808.1|AC022457_11 putative peroxin [Oryza sativa (japoni... 40 0.032
ref|ZP_00070906.1| hypothetical protein [Trichodesmium erythraeu... 33 2.3
pir||G86325 hypothetical protein T29M8.9 - Arabidopsis thaliana ... 33 2.3
>dbj|BAC42305.1| unknown protein [Arabidopsis thaliana]
Length = 152
Score = 40.0 bits (92), Expect = 0.024
Identities = 17/24 (70%), Positives = 19/24 (78%)
Frame = -1
Query: 595 EMMECWYQSVEERISASTVCPPSP 524
+MME WYQS EER+SA TV PP P
Sbjct: 54 KMMEWWYQSAEERLSAPTVYPPPP 77
>ref|NP_187096.1| unknown protein; protein id: At3g04460.1 [Arabidopsis thaliana]
gi|12585318|sp|Q9M841|PEXC_ARATH Putative peroxisome
assembly protein 12 (Peroxin-12)
gi|7547105|gb|AAF63777.1| unknown protein [Arabidopsis
thaliana]
Length = 372
Score = 40.0 bits (92), Expect = 0.024
Identities = 17/24 (70%), Positives = 19/24 (78%)
Frame = -1
Query: 595 EMMECWYQSVEERISASTVCPPSP 524
+MME WYQS EER+SA TV PP P
Sbjct: 270 KMMEWWYQSAEERLSAPTVYPPPP 293
>gb|AAK27808.1|AC022457_11 putative peroxin [Oryza sativa (japonica cultivar-group)]
Length = 369
Score = 39.7 bits (91), Expect = 0.032
Identities = 17/24 (70%), Positives = 19/24 (78%)
Frame = -1
Query: 595 EMMECWYQSVEERISASTVCPPSP 524
+MME WYQS EER+SA TV PP P
Sbjct: 271 KMMEWWYQSAEERMSAPTVYPPPP 294
>ref|ZP_00070906.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 291
Score = 33.5 bits (75), Expect = 2.3
Identities = 25/106 (23%), Positives = 44/106 (40%), Gaps = 6/106 (5%)
Frame = -3
Query: 344 PVSFKHTSAGVSHNMASFELAEVTDLWTFSSIILMTFIVWCCFLLQFLAMHIFFV----- 180
P H+S G++ N+ F A +++ F WCCFL+ +A+H+
Sbjct: 11 PRELLHSSGGLNTNLLMFLSALGIVIFSTCGYFYWHFPGWCCFLMNVVALHMAGTVIHDA 70
Query: 179 -SKVTHTDDCCSSFLADCNTHLYMF*I*VFTSDNETIFIYPHSHLS 45
H D ++ L + L F VFT + + H+H++
Sbjct: 71 SHNSAHKDRLINAILGHGSALLLGFAFPVFT----RVHLQHHAHVN 112
>pir||G86325 hypothetical protein T29M8.9 - Arabidopsis thaliana
gi|8954059|gb|AAF82232.1|AC069143_8 Contains similarity
to a non-phototropic hypocotyl 4 (NPH4) protein from
Arabidopsis thaliana gb|AF186466
Length = 1062
Score = 33.5 bits (75), Expect = 2.3
Identities = 17/30 (56%), Positives = 21/30 (69%)
Frame = -2
Query: 489 ENAFKRVVS*LEDGFGMKDASSSVLYVLSL 400
ENAFKR + + + FGMKDA SS+ LSL
Sbjct: 363 ENAFKRAMPWMGEDFGMKDAQSSMFPGLSL 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,419,441
Number of Sequences: 1393205
Number of extensions: 9114603
Number of successful extensions: 21920
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21911
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
