Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002604A_C01 KMC002604A_c01
(773 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567873.1| putative protein; protein id: At4g31340.1, supp... 110 2e-23
ref|NP_565569.1| expressed protein; protein id: At2g24420.1, sup... 108 9e-23
pir||D84636 hypothetical protein At2g24420 [imported] - Arabidop... 108 9e-23
gb|AAO72581.1| unknown [Oryza sativa (japonica cultivar-group)] 107 2e-22
pir||T04501 hypothetical protein F8F16.160 - Arabidopsis thalian... 68 1e-10
>ref|NP_567873.1| putative protein; protein id: At4g31340.1, supported by cDNA:
gi_14334773 [Arabidopsis thaliana]
gi|26983878|gb|AAN86191.1| unknown protein [Arabidopsis
thaliana]
Length = 437
Score = 110 bits (276), Expect = 2e-23
Identities = 56/97 (57%), Positives = 65/97 (66%)
Frame = -3
Query: 771 YTKKVVHAYRNFLQSATTYHRQVQATVQETLKKHELTRPLATKELEWFAASALLALPIIL 592
YT KV+ Y FL+SATTYH QVQA V+ LK HELT P AT E WFAASALL PI +
Sbjct: 343 YTTKVIIVYTEFLESATTYHNQVQAHVERKLKSHELTEPFATNEFVWFAASALLVFPIFV 402
Query: 591 LARAFSAIFCSKKVNKPARSGNTHHARRKAKRVHPDK 481
R S++FC+ K KP + + HH RRKAKR H DK
Sbjct: 403 AYRVLSSLFCT-KTKKPVKHPH-HHGRRKAKRAHTDK 437
>ref|NP_565569.1| expressed protein; protein id: At2g24420.1, supported by cDNA:
gi_16930416 [Arabidopsis thaliana]
gi|16930417|gb|AAL31894.1|AF419562_1 At2g24420/T28I24.15
[Arabidopsis thaliana] gi|20197763|gb|AAD18124.2|
expressed protein [Arabidopsis thaliana]
Length = 440
Score = 108 bits (270), Expect = 9e-23
Identities = 54/97 (55%), Positives = 67/97 (68%)
Frame = -3
Query: 771 YTKKVVHAYRNFLQSATTYHRQVQATVQETLKKHELTRPLATKELEWFAASALLALPIIL 592
YT K VH Y+ FL+SA+TYH Q+QA V+ LK HEL P ATKE WFAASALLALPI +
Sbjct: 346 YTTKTVHYYKEFLESASTYHHQLQANVESKLKSHELLEPFATKEFIWFAASALLALPIFI 405
Query: 591 LARAFSAIFCSKKVNKPARSGNTHHARRKAKRVHPDK 481
+ + ++FC+ K KP R + H RRKA+R H DK
Sbjct: 406 VYKFLCSLFCT-KTKKPIRQSH-QHTRRKARRGHSDK 440
>pir||D84636 hypothetical protein At2g24420 [imported] - Arabidopsis thaliana
Length = 465
Score = 108 bits (270), Expect = 9e-23
Identities = 54/97 (55%), Positives = 67/97 (68%)
Frame = -3
Query: 771 YTKKVVHAYRNFLQSATTYHRQVQATVQETLKKHELTRPLATKELEWFAASALLALPIIL 592
YT K VH Y+ FL+SA+TYH Q+QA V+ LK HEL P ATKE WFAASALLALPI +
Sbjct: 371 YTTKTVHYYKEFLESASTYHHQLQANVESKLKSHELLEPFATKEFIWFAASALLALPIFI 430
Query: 591 LARAFSAIFCSKKVNKPARSGNTHHARRKAKRVHPDK 481
+ + ++FC+ K KP R + H RRKA+R H DK
Sbjct: 431 VYKFLCSLFCT-KTKKPIRQSH-QHTRRKARRGHSDK 465
>gb|AAO72581.1| unknown [Oryza sativa (japonica cultivar-group)]
Length = 319
Score = 107 bits (267), Expect = 2e-22
Identities = 51/97 (52%), Positives = 67/97 (68%)
Frame = -3
Query: 771 YTKKVVHAYRNFLQSATTYHRQVQATVQETLKKHELTRPLATKELEWFAASALLALPIIL 592
YTK+ V Y +FL+SATTYHRQ Q+T+ + L +HE+++ LATKEL WF ASALLA+P+ +
Sbjct: 225 YTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAIPVYI 284
Query: 591 LARAFSAIFCSKKVNKPARSGNTHHARRKAKRVHPDK 481
+ R FCSKK +P GN H R+ KR H DK
Sbjct: 285 IYRLLMEAFCSKKPKRPPHGGN--HGHRRHKRRHADK 319
>pir||T04501 hypothetical protein F8F16.160 - Arabidopsis thaliana
gi|2827529|emb|CAA16537.1| putative protein [Arabidopsis
thaliana] gi|7270036|emb|CAB79852.1| putative protein
[Arabidopsis thaliana]
Length = 398
Score = 68.2 bits (165), Expect = 1e-10
Identities = 32/53 (60%), Positives = 35/53 (65%)
Frame = -3
Query: 771 YTKKVVHAYRNFLQSATTYHRQVQATVQETLKKHELTRPLATKELEWFAASAL 613
YT KV+ Y FL+SATTYH QVQA V+ LK HELT P AT E WFA L
Sbjct: 343 YTTKVIIVYTEFLESATTYHNQVQAHVERKLKSHELTEPFATNEFVWFAVFCL 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,389,805
Number of Sequences: 1393205
Number of extensions: 15010100
Number of successful extensions: 39947
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 34635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39117
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
