Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002602A_C01 KMC002602A_c01
(371 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566312.1| F-box protein family, AtFBL12; protein id: At3g... 112 9e-25
ref|XP_098421.2| similar to hypothetical protein DKFZp434C1715.1... 47 5e-05
pir||T43444 hypothetical protein DKFZp434C1715.1 - human (fragme... 47 5e-05
ref|NP_567467.1| F-box protein family, AtFBL4; protein id: At4g1... 47 6e-05
gb|AAF03128.1|AF176518_1 F-box protein FBL2 [Homo sapiens] 46 1e-04
>ref|NP_566312.1| F-box protein family, AtFBL12; protein id: At3g07550.1 [Arabidopsis
thaliana] gi|6041850|gb|AAF02159.1|AC009853_19 unknown
protein [Arabidopsis thaliana]
gi|26452863|dbj|BAC43510.1| unknown protein [Arabidopsis
thaliana]
Length = 395
Score = 112 bits (281), Expect = 9e-25
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = -2
Query: 370 EVRISGWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALE 191
EV+ISGW+AVG +CRNLK+LHVNRC NL D GLLAL+ GC +L ILY++G +RLT A+E
Sbjct: 307 EVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCGCMNLQILYMNGNARLTPTAIE 366
Query: 190 LFKSHRPDVCIKEEEVMSIKPNW 122
+F+ HR D+ ++ EE+M I P+W
Sbjct: 367 MFRLHRADITLRTEEMMVIGPDW 389
>ref|XP_098421.2| similar to hypothetical protein DKFZp434C1715.1 - human (fragment)
[Homo sapiens]
Length = 314
Score = 47.4 bits (111), Expect = 5e-05
Identities = 19/64 (29%), Positives = 36/64 (55%)
Frame = -2
Query: 355 GWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALELFKSH 176
G + +G CR LK +H +C+ +SD G++ + GC L +Y+ +T +++ F H
Sbjct: 57 GLKQLGSKCRELKDIHFGQCYKISDEGMIVIAKGCLKLQRIYMQENKLVTDQSVKAFAEH 116
Query: 175 RPDV 164
P++
Sbjct: 117 CPEL 120
Score = 32.3 bits (72), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = -2
Query: 346 AVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLT 206
AV +C L+++HV L+D GL L CR L ++ C +++
Sbjct: 34 AVASHCPLLQKVHVGNQDKLTDEGLKQLGSKCRELKDIHFGQCYKIS 80
>pir||T43444 hypothetical protein DKFZp434C1715.1 - human (fragment)
gi|6599210|emb|CAB63737.1| hypothetical protein [Homo
sapiens]
Length = 381
Score = 47.4 bits (111), Expect = 5e-05
Identities = 19/64 (29%), Positives = 36/64 (55%)
Frame = -2
Query: 355 GWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALELFKSH 176
G + +G CR LK +H +C+ +SD G++ + GC L +Y+ +T +++ F H
Sbjct: 124 GLKQLGSKCRELKDIHFGQCYKISDEGMIVIAKGCLKLQRIYMQENKLVTDQSVKAFAEH 183
Query: 175 RPDV 164
P++
Sbjct: 184 CPEL 187
Score = 32.3 bits (72), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = -2
Query: 346 AVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLT 206
AV +C L+++HV L+D GL L CR L ++ C +++
Sbjct: 101 AVASHCPLLQKVHVGNQDKLTDEGLKQLGSKCRELKDIHFGQCYKIS 147
>ref|NP_567467.1| F-box protein family, AtFBL4; protein id: At4g15475.1, supported by
cDNA: 100411., supported by cDNA: gi_13430831, supported
by cDNA: gi_13605654, supported by cDNA: gi_15810598
[Arabidopsis thaliana]
gi|13430832|gb|AAK26038.1|AF360328_1 putative F-box
protein family, AtFBL4 [Arabidopsis thaliana]
gi|13605655|gb|AAK32821.1|AF361808_1 AT4g15470/dl3775w
[Arabidopsis thaliana] gi|15810599|gb|AAL07187.1|
putative F-box protein family protein FBL4 [Arabidopsis
thaliana]
Length = 610
Score = 47.0 bits (110), Expect = 6e-05
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = -2
Query: 331 CRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIAL 194
CRNLK+LH+ RC+ + + G++++ C+SLT L L C ++ + AL
Sbjct: 423 CRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKAL 468
Score = 43.1 bits (100), Expect = 9e-04
Identities = 21/61 (34%), Positives = 38/61 (61%), Gaps = 1/61 (1%)
Frame = -2
Query: 355 GWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGC-RSLTILYLSGCSRLTSIALELFKS 179
G AVG +C+ L+ L++ C L+D G++ L GC +SL + ++ +++T ++LE S
Sbjct: 182 GLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGS 241
Query: 178 H 176
H
Sbjct: 242 H 242
Score = 42.4 bits (98), Expect = 0.001
Identities = 20/59 (33%), Positives = 32/59 (53%)
Frame = -2
Query: 367 VRISGWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALE 191
V G +A+ C+ L+R+ +N CHN+ G+ A+ C L L L C R+ + AL+
Sbjct: 333 VSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQ 391
Score = 41.6 bits (96), Expect = 0.003
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -2
Query: 355 GWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIAL 194
G +A+G C LK L + C + + L + GC+SL IL+L CS + IA+
Sbjct: 363 GIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAM 416
Score = 35.8 bits (81), Expect = 0.14
Identities = 17/59 (28%), Positives = 34/59 (56%)
Frame = -2
Query: 370 EVRISGWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIAL 194
E+ G ++G +C++L L + C + + L+A+ GC SL L +SGC++++ +
Sbjct: 436 EIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC-SLQQLNVSGCNQISDAGI 493
Score = 35.8 bits (81), Expect = 0.14
Identities = 15/47 (31%), Positives = 27/47 (56%)
Frame = -2
Query: 358 SGWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGC 218
S Q +G C++L+ LH+ C + D + ++ GCR+L L++ C
Sbjct: 388 SALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRC 434
Score = 35.8 bits (81), Expect = 0.14
Identities = 17/55 (30%), Positives = 32/55 (57%)
Frame = -2
Query: 355 GWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALE 191
G +A+G + LK L ++ C+ +S GL A+ GC+ L + ++GC + + +E
Sbjct: 311 GMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIE 365
Score = 34.7 bits (78), Expect = 0.31
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 343 VGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALELFKSHRPDV 164
+G C LK L ++ CH+++D GL L C+ L ++ C +TS + S P +
Sbjct: 522 LGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCPHI 581
Score = 34.7 bits (78), Expect = 0.31
Identities = 17/41 (41%), Positives = 28/41 (67%)
Frame = -2
Query: 346 AVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLS 224
A+G C +L++L+V+ C+ +SD G+ A+ GC LT L +S
Sbjct: 470 AIGKGC-SLQQLNVSGCNQISDAGITAIARGCPQLTHLDIS 509
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -2
Query: 349 QAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIA 197
+AVG +C+ L+ L+++ + + D GL+A+ GC L L L C +T +A
Sbjct: 237 EAVGSHCKLLEVLYLDSEY-IHDKGLIAVAQGCHRLKNLKLQ-CVSVTDVA 285
>gb|AAF03128.1|AF176518_1 F-box protein FBL2 [Homo sapiens]
Length = 425
Score = 46.2 bits (108), Expect = 1e-04
Identities = 26/78 (33%), Positives = 39/78 (49%)
Frame = -2
Query: 334 YCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALELFKSHRPDVCIK 155
YC L L++ C ++D G++ + GC L L LSGCS LT +L + P + I
Sbjct: 208 YCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQIL 267
Query: 154 EEEVMSIKPNWEFTMIPR 101
E S + FT++ R
Sbjct: 268 EAARCSHLTDAGFTLLAR 285
Score = 43.1 bits (100), Expect = 9e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = -2
Query: 331 CRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALELFKSH 176
CRNL+ L+++ C ++ G+ AL GCR L L L GC++L AL+ +++
Sbjct: 157 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNY 208
Score = 38.1 bits (87), Expect = 0.028
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -2
Query: 370 EVRISGWQAVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLT 206
++ G +A+ CR LK L + C L D L +Q+ C L L L CSR+T
Sbjct: 170 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRIT 224
Score = 36.6 bits (83), Expect = 0.081
Identities = 20/59 (33%), Positives = 26/59 (43%)
Frame = -2
Query: 346 AVGLYCRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALELFKSHRP 170
A+GL C L+ L RC +L+D G L C L + L C +T L H P
Sbjct: 256 ALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCP 314
Score = 35.0 bits (79), Expect = 0.23
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -2
Query: 343 VGLYCRNLKRLHVNRCHNLSDGGLLALQD---GCRSLTILYLSGCSRLTSIALELFKSHR 173
+ ++C L+ L ++ C ++D G+L L + G L +L L C +T +ALE ++ R
Sbjct: 309 LSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCR 368
Score = 34.3 bits (77), Expect = 0.40
Identities = 15/47 (31%), Positives = 27/47 (56%)
Frame = -2
Query: 331 CRNLKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLTSIALE 191
CRN++ L++N C ++D +L C L L L+ C +T+ +L+
Sbjct: 105 CRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLK 151
Score = 31.2 bits (69), Expect = 3.4
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = -2
Query: 322 LKRLHVNRCHNLSDGGLLALQDGCRSLTILYLSGCSRLT 206
L++L + C + D L CR++ L L+GC+++T
Sbjct: 82 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKIT 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,076,954
Number of Sequences: 1393205
Number of extensions: 6249563
Number of successful extensions: 14101
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 13354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14068
length of database: 448,689,247
effective HSP length: 99
effective length of database: 310,761,952
effective search space used: 7458286848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
