Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002592A_C01 KMC002592A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173710.1| unknown protein; protein id: At1g22970.1, suppo... 159 2e-38
ref|NP_177271.1| unknown protein; protein id: At1g71150.1 [Arabi... 146 2e-34
ref|NP_564185.1| unknown protein; protein id: At1g22980.1 [Arabi... 91 2e-17
pir||H86363 F19G10.7 protein - Arabidopsis thaliana gi|2462830|g... 91 2e-17
ref|NP_596690.1| hypothetical serine-rich secreted protein [Schi... 39 0.041
>ref|NP_173710.1| unknown protein; protein id: At1g22970.1, supported by cDNA:
gi_17979267 [Arabidopsis thaliana]
gi|25372692|pir||G86363 F19G10.8 protein - Arabidopsis
thaliana gi|2462829|gb|AAB72164.1| unknown protein
[Arabidopsis thaliana] gi|17979268|gb|AAL49950.1|
At1g22970/F19G10_8 [Arabidopsis thaliana]
gi|21700855|gb|AAM70551.1| At1g22970/F19G10_8
[Arabidopsis thaliana]
Length = 357
Score = 159 bits (403), Expect = 2e-38
Identities = 82/164 (50%), Positives = 112/164 (68%), Gaps = 3/164 (1%)
Frame = -3
Query: 610 ESEPHDDNSS---EGDDDIGNDLSPEEMKVAERAIAVVSDTLSVVKELIRSITGLIKLEK 440
E E DN S + DDD+G+DLSPEEM+VA +VS+T+ V+KELIR ITG+IK+E
Sbjct: 192 ECEASGDNMSSDDDDDDDLGDDLSPEEMEVATMVTEIVSETIMVIKELIRVITGMIKMEN 251
Query: 439 PSDNSEFVNSLEKLLQLCQELGKQIDEIGACLYPPQEIPSINAALEKIHSTIDVVQVEVA 260
P DNS FV SLEKLL+LCQ G QIDE+GAC+YPPQE+ + ++ I +D + EV
Sbjct: 252 PKDNSGFVESLEKLLKLCQGTGVQIDELGACVYPPQEMNKMKQTVKVIQGNLDEFETEVE 311
Query: 259 ALQGTSDVFLEACNALRSSLRQLVSELSSSSIADLESKVENITL 128
L+ +SD F AC LR+SL+ + +EL A+L +++N+TL
Sbjct: 312 RLKSSSDGFSGACGKLRNSLKHMETELDKRCEAELVVEMQNVTL 355
>ref|NP_177271.1| unknown protein; protein id: At1g71150.1 [Arabidopsis thaliana]
gi|25372689|pir||B96736 unknown protein F23N20.14
[imported] - Arabidopsis thaliana
gi|12323430|gb|AAG51693.1|AC016972_12 unknown protein;
51945-53271 [Arabidopsis thaliana]
Length = 351
Score = 146 bits (368), Expect = 2e-34
Identities = 73/161 (45%), Positives = 113/161 (69%), Gaps = 1/161 (0%)
Frame = -3
Query: 607 SEPHDDNSSEGDDDIGNDLSPEEMKVAERAIAVVSDTLSVVKELIRSITGLIKLEKPSDN 428
S H+ +++ DDD+G++LSPEE +VA+ +VS+TL V+KELIR+IT +IKLE P DN
Sbjct: 191 SPDHNVSTNSDDDDLGDELSPEEFEVAKMVADIVSETLVVIKELIRAITCMIKLENPKDN 250
Query: 427 SEFVNSLEKLLQLCQELGKQIDEIGACLYPPQEIPSINAALEKIHSTIDVVQVEVAALQG 248
SEFV+S EKLL+LCQ +G QIDE+GAC+YPPQE + +E + +I ++ +V + +
Sbjct: 251 SEFVDSFEKLLKLCQGIGVQIDELGACVYPPQEFGLMKQTVENMRESIGEIESDVKSSKN 310
Query: 247 TSDVFLE-ACNALRSSLRQLVSELSSSSIADLESKVENITL 128
+S L +C L+S + +V+EL + A++ K++N+TL
Sbjct: 311 SSSEALSGSCRRLQSLIEHMVTELDTRIEAEVVYKMQNVTL 351
>ref|NP_564185.1| unknown protein; protein id: At1g22980.1 [Arabidopsis thaliana]
Length = 362
Score = 90.5 bits (223), Expect = 2e-17
Identities = 49/131 (37%), Positives = 84/131 (63%), Gaps = 1/131 (0%)
Frame = -3
Query: 586 SSEGDDDIGNDLSPEEMKVAERAIAVVSDTLSVVKELIRSITGLIKLEKPSDNSEFVNSL 407
SSEG+ G+D SPE+++VA+ +V + ++V+ +IR IT +++ E ++NS FV SL
Sbjct: 190 SSEGEAS-GDDFSPEQIEVAKMVADIVYEAMTVII-VIRVITRMMEKENSNENSVFVESL 247
Query: 406 EKLLQLCQELGKQIDEIGACLY-PPQEIPSINAALEKIHSTIDVVQVEVAALQGTSDVFL 230
EKLL+LCQ G I+E+G C+Y PP +I I ++ + +D V+ +V ++ +S+ F
Sbjct: 248 EKLLKLCQRSGVVIEELGTCVYHPPLKIDKITQTVKILEGNLDEVEAQVEYMKRSSNAFP 307
Query: 229 EACNALRSSLR 197
C LR +++
Sbjct: 308 GVCRKLRDAIK 318
>pir||H86363 F19G10.7 protein - Arabidopsis thaliana gi|2462830|gb|AAB72165.1|
hypothetical protein [Arabidopsis thaliana]
Length = 335
Score = 90.5 bits (223), Expect = 2e-17
Identities = 49/131 (37%), Positives = 84/131 (63%), Gaps = 1/131 (0%)
Frame = -3
Query: 586 SSEGDDDIGNDLSPEEMKVAERAIAVVSDTLSVVKELIRSITGLIKLEKPSDNSEFVNSL 407
SSEG+ G+D SPE+++VA+ +V + ++V+ +IR IT +++ E ++NS FV SL
Sbjct: 136 SSEGEAS-GDDFSPEQIEVAKMVADIVYEAMTVII-VIRVITRMMEKENSNENSVFVESL 193
Query: 406 EKLLQLCQELGKQIDEIGACLY-PPQEIPSINAALEKIHSTIDVVQVEVAALQGTSDVFL 230
EKLL+LCQ G I+E+G C+Y PP +I I ++ + +D V+ +V ++ +S+ F
Sbjct: 194 EKLLKLCQRSGVVIEELGTCVYHPPLKIDKITQTVKILEGNLDEVEAQVEYMKRSSNAFP 253
Query: 229 EACNALRSSLR 197
C LR +++
Sbjct: 254 GVCRKLRDAIK 264
>ref|NP_596690.1| hypothetical serine-rich secreted protein [Schizosaccharomyces
pombe] gi|7493381|pir||T39903 serine-rich protein -
fission yeast (Schizosaccharomyces pombe)
gi|3873550|emb|CAA22127.1| hypothetical serine-rich
secreted protein [Schizosaccharomyces pombe]
Length = 534
Score = 39.3 bits (90), Expect = 0.041
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Frame = +3
Query: 141 STLDSKSAILELLSSDTSCLSELLKALHASRNTSDVP*SAATSTCTTSIVLWIFSRAAFM 320
S+ S S+I+ SS +S + + +S ++S P S +++ ++S FS
Sbjct: 264 SSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSS 323
Query: 321 EGISCGG*-RQAPISS---ICLPSS*QSCNSFSSEFTNSLLSLGFSSLIRPVMERISSFT 488
+S +P SS I SS S +SFSS ++S S FSS + SS
Sbjct: 324 SSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
Query: 489 TERVSDTTAIALSATFIS--SGDKSFPISSSPSLELSS 596
T S ++ A S++ S S KS S S S +SS
Sbjct: 384 TSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421
Score = 36.6 bits (83), Expect = 0.27
Identities = 41/153 (26%), Positives = 71/153 (45%)
Frame = +3
Query: 153 SKSAILELLSSDTSCLSELLKALHASRNTSDVP*SAATSTCTTSIVLWIFSRAAFMEGIS 332
S S+++ SS +S S L + +S +TS +P ++++S+ T+S + S + S
Sbjct: 211 SSSSVVSSSSSPSSSSSSTLTS--SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSS 268
Query: 333 CGG*RQAPISSICLPSS*QSCNSFSSEFTNSLLSLGFSSLIRPVMERISSFTTERVSDTT 512
+ SS P+S S S SS ++S S + ISS ++ S ++
Sbjct: 269 SSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSST---------ISSSSSSSSSFSS 319
Query: 513 AIALSATFISSGDKSFPISSSPSLELSSCGSDS 611
++ S+ SS S P SSS ++ SS S
Sbjct: 320 TLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
Score = 35.8 bits (81), Expect = 0.45
Identities = 57/191 (29%), Positives = 83/191 (42%), Gaps = 17/191 (8%)
Frame = +3
Query: 90 SNISALITV*LLVNVIFSTLDSKSAILELLSSDTSCLSELLKALHASRNTSDVP*SAATS 269
S+ S L + L + I ST S S+ LSS +S + A +S ++S + S+++S
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSST----ASSSSSSSSIISSSSSSS 280
Query: 270 TCTTSIVLWIFSRAAFMEG-------ISCGG*RQAPISSICLPSS*QSCNSFSSEFTNSL 428
+ TS I S ++ IS + SS SS S +SFSS T+S
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340
Query: 429 LSLGFSSLIRPVMERISSFTTER---------VSDTTAIALSATFISSGDKSFPISSSP- 578
++ SS P SS T+ VS +++ + S SS S P SSS
Sbjct: 341 STISSSSS-SPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSH 399
Query: 579 SLELSSCGSDS 611
S LSS S S
Sbjct: 400 SSSLSSHKSSS 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,408,118
Number of Sequences: 1393205
Number of extensions: 9156374
Number of successful extensions: 34753
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 31024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34091
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
