Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002578A_C01 KMC002578A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_034299.2| coagulation factor II (thrombin) receptor; thro... 33 2.4
gb|AAA40438.1| thrombin receptor 33 2.4
gb|AAL50818.1|AF453778_1 high affinity nitrate transporter NrtB ... 31 9.1
ref|ZP_00071068.1| hypothetical protein [Trichodesmium erythraeu... 31 9.1
ref|NP_344093.1| Acetolactate synthase large subunit homolog (il... 31 9.1
>ref|NP_034299.2| coagulation factor II (thrombin) receptor; thrombin receptor [Mus
musculus] gi|2506486|sp|P30558|PAR1_MOUSE Proteinase
activated receptor 1 precursor (PAR-1) (Thrombin
receptor) gi|1710885|gb|AAB38308.1| thrombin receptor
[Mus musculus] gi|21594528|gb|AAH31516.1| Unknown
(protein for MGC:28086) [Mus musculus]
gi|26351901|dbj|BAC39587.1| unnamed protein product [Mus
musculus]
Length = 430
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 236 AVKATKINEQPNPCNRLQEAMVSSLKLCSNHLPSIIYRSQL 358
++ K + PN CN + M S + CS+HL + IY+ L
Sbjct: 389 SILCCKESSDPNSCNSTGQLMPSKMDTCSSHLNNSIYKKLL 429
>gb|AAA40438.1| thrombin receptor
Length = 430
Score = 32.7 bits (73), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 236 AVKATKINEQPNPCNRLQEAMVSSLKLCSNHLPSIIYRSQL 358
++ K + PN CN + M S + CS+HL + IY+ L
Sbjct: 389 SILCCKESSDPNSCNSTGQLMPSKMDTCSSHLNNSIYKKLL 429
>gb|AAL50818.1|AF453778_1 high affinity nitrate transporter NrtB [Emericella nidulans]
Length = 497
Score = 30.8 bits (68), Expect = 9.1
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 16/82 (19%)
Frame = -2
Query: 224 ILFRIVESPAYLI------NFVIQPSNFHPS----------GISCFCS*RFFELKFRARS 93
++F +V A+ I NF I P + HPS G+ F F + FR
Sbjct: 408 VMFGLVVLMAFFIAASNGANFAIVP-HVHPSANGIVSGIVGGMGNFGG-IIFAIVFRYNG 465
Query: 92 SYFPRNLWIIGYVNLLCCLLLN 27
+ + R+LWIIG++ L C L +
Sbjct: 466 TQYHRSLWIIGFIILGCTLFFS 487
>ref|ZP_00071068.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 633
Score = 30.8 bits (68), Expect = 9.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 135 ETRNSRRMKIRWLNYKIDQVSGRLNYPKQN-KFTKQLKLLKLTSSPILAIGSKKLWSLR 308
E N+R + RWL Y I+Q + ++ N T L LL+ T + +G +++ +R
Sbjct: 443 EVENTRNNRERWLIYLIEQANAEVSKVAPNGGTTLSLVLLESTKMSLAHVGDSRIYLIR 501
>ref|NP_344093.1| Acetolactate synthase large subunit homolog (ilvB-4) [Sulfolobus
solfataricus] gi|25392312|pir||D90453 hypothetical
protein ilvB-4 [imported] - Sulfolobus solfataricus
gi|13816110|gb|AAK42883.1| Acetolactate synthase large
subunit homolog (ilvB-4) [Sulfolobus solfataricus]
Length = 531
Score = 30.8 bits (68), Expect = 9.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 174 NYKIDQVSGRLNYPKQNKFTKQLKLLKLTSSPILAIG 284
NYKI +V+ L YP + + + L L S PIL +G
Sbjct: 179 NYKIKKVNRTLIYPTKEEVREALNFLSECSKPILLLG 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,740,158
Number of Sequences: 1393205
Number of extensions: 7629097
Number of successful extensions: 16542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16539
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
