Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002566A_C01 KMC002566A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11080.1| contains similarity to RNA-binding protein~gene_... 92 8e-18
ref|NP_568660.1| RRM-containing protein; protein id: At5g46250.1... 92 8e-18
dbj|BAB90138.1| RNA-binding protein-like [Oryza sativa (japonica... 60 4e-08
ref|NP_188540.1| RNA-binding protein, putative; protein id: At3g... 49 6e-05
gb|AAL06505.1|AF412052_1 At2g43970/F6E13.10 [Arabidopsis thaliana] 49 8e-05
>dbj|BAB11080.1| contains similarity to RNA-binding protein~gene_id:MPL12.3
[Arabidopsis thaliana]
Length = 411
Score = 91.7 bits (226), Expect = 8e-18
Identities = 44/87 (50%), Positives = 56/87 (63%), Gaps = 6/87 (6%)
Frame = -3
Query: 669 HHEDTPEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAVNGMGHGCASST-----HAAEASK 505
HH D P ++DG + KDK G + R G+ R+ ++ NG+GHG ASS+ H E SK
Sbjct: 318 HHSDNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSK 377
Query: 504 PPPGPKMPDGTRGFAMGRGRP-PVPAS 427
PPGP+MPDGTRGF MGRG+ P P S
Sbjct: 378 RPPGPRMPDGTRGFTMGRGKAIPPPTS 404
>ref|NP_568660.1| RRM-containing protein; protein id: At5g46250.1, supported by cDNA:
gi_15215747 [Arabidopsis thaliana]
gi|15215748|gb|AAK91419.1| AT5g46250/MPL12_3
[Arabidopsis thaliana] gi|23308375|gb|AAN18157.1|
At5g46250/MPL12_3 [Arabidopsis thaliana]
Length = 422
Score = 91.7 bits (226), Expect = 8e-18
Identities = 44/87 (50%), Positives = 56/87 (63%), Gaps = 6/87 (6%)
Frame = -3
Query: 669 HHEDTPEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAVNGMGHGCASST-----HAAEASK 505
HH D P ++DG + KDK G + R G+ R+ ++ NG+GHG ASS+ H E SK
Sbjct: 329 HHSDNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSK 388
Query: 504 PPPGPKMPDGTRGFAMGRGRP-PVPAS 427
PPGP+MPDGTRGF MGRG+ P P S
Sbjct: 389 RPPGPRMPDGTRGFTMGRGKAIPPPTS 415
>dbj|BAB90138.1| RNA-binding protein-like [Oryza sativa (japonica cultivar-group)]
Length = 389
Score = 59.7 bits (143), Expect = 4e-08
Identities = 32/77 (41%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
Frame = -3
Query: 666 HEDTPEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAVNGMGHGCASSTHAAE-ASKPPPGP 490
HED + + + KG RY++QGR + + +G GH + +T ++ +KP PGP
Sbjct: 307 HEDMHQHQKVNAKGGRKG--RYKSQGRGQIQQN--TSGQGHVSSPATSGSDHVNKPIPGP 362
Query: 489 KMPDGTRGFAMGRGRPP 439
+MPDGTRGF MGRG+ P
Sbjct: 363 RMPDGTRGFTMGRGKSP 379
>ref|NP_188540.1| RNA-binding protein, putative; protein id: At3g19090.1 [Arabidopsis
thaliana] gi|11994567|dbj|BAB02607.1| RNA-binding
protein-like [Arabidopsis thaliana]
Length = 455
Score = 48.9 bits (115), Expect = 6e-05
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 12/93 (12%)
Frame = -3
Query: 669 HHEDTPEEEDGDHLSKDKGGQRYRNQGRSRKHKYRAVNGMGHGCA---------SSTHAA 517
H ++ + DGD + + R +GR R + AV G G S +
Sbjct: 359 HLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSH 418
Query: 516 EASKPPP---GPKMPDGTRGFAMGRGRPPVPAS 427
E+S P GP+MPDGTRGF MGRG+P + S
Sbjct: 419 ESSSPKTATKGPRMPDGTRGFTMGRGKPSISLS 451
>gb|AAL06505.1|AF412052_1 At2g43970/F6E13.10 [Arabidopsis thaliana]
Length = 329
Score = 48.5 bits (114), Expect = 8e-05
Identities = 31/97 (31%), Positives = 46/97 (46%), Gaps = 22/97 (22%)
Frame = -3
Query: 666 HEDTPEEEDGDHLSKDKG---GQRYRNQGRSRKHKYRAV---NGMGH---------GCAS 532
+E + G + + KG GQ ++NQ ++ H + NG G+ G
Sbjct: 227 NEKAAGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQP 286
Query: 531 STHAAE-------ASKPPPGPKMPDGTRGFAMGRGRP 442
S + + PPGP+MPDGTRGF+MGRG+P
Sbjct: 287 SNNPMNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKP 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 630,080,153
Number of Sequences: 1393205
Number of extensions: 15001301
Number of successful extensions: 52247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51861
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
