Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002546A_C01 KMC002546A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL99609.1|AF348413_1 cytosolic aldehyde dehydrogenase RF2C [... 181 5e-45
gb|AAL99608.1|AF348412_1 cytosolic aldehyde dehydrogenase RF2C [... 181 5e-45
dbj|BAA96794.1| cytosolic aldehyde dehydrogenase [Oryza sativa (... 176 2e-43
gb|AAL99611.1|AF348415_1 cytosolic aldehyde dehydrogenase RF2D [... 163 1e-39
gb|AAL99610.1|AF348414_1 cytosolic aldehyde dehydrogenase RF2D [... 163 1e-39
>gb|AAL99609.1|AF348413_1 cytosolic aldehyde dehydrogenase RF2C [Zea mays]
Length = 503
Score = 181 bits (459), Expect = 5e-45
Identities = 83/110 (75%), Positives = 97/110 (87%)
Frame = -1
Query: 536 DMLIVQDEIFGPVMALKKFKTVEEAIKSANHTRYGLAAGIMTKNLDIANTVSRSIRAGSV 357
DM I QDEIFGPVMAL KFKTVEE I+ AN+TRYGLAAGI+TKN+D+ANTVSRSIRAG++
Sbjct: 394 DMTIAQDEIFGPVMALMKFKTVEEVIQKANNTRYGLAAGIVTKNIDVANTVSRSIRAGAI 453
Query: 356 WINCYFALDHDIPFGGYKASGFGKDYGLEALHQYLPVKSVVTPIYHSPWL 207
WINCYFA D D PFGGYK SGFGKD G++AL +YL K+VVTP+Y++PWL
Sbjct: 454 WINCYFAFDPDAPFGGYKMSGFGKDMGMDALDKYLQTKTVVTPLYNTPWL 503
>gb|AAL99608.1|AF348412_1 cytosolic aldehyde dehydrogenase RF2C [Zea mays]
Length = 502
Score = 181 bits (459), Expect = 5e-45
Identities = 83/110 (75%), Positives = 97/110 (87%)
Frame = -1
Query: 536 DMLIVQDEIFGPVMALKKFKTVEEAIKSANHTRYGLAAGIMTKNLDIANTVSRSIRAGSV 357
DM I QDEIFGPVMAL KFKTVEE I+ AN+TRYGLAAGI+TKN+D+ANTVSRSIRAG++
Sbjct: 393 DMTIAQDEIFGPVMALMKFKTVEEVIQKANNTRYGLAAGIVTKNIDVANTVSRSIRAGAI 452
Query: 356 WINCYFALDHDIPFGGYKASGFGKDYGLEALHQYLPVKSVVTPIYHSPWL 207
WINCYFA D D PFGGYK SGFGKD G++AL +YL K+VVTP+Y++PWL
Sbjct: 453 WINCYFAFDPDAPFGGYKMSGFGKDMGMDALDKYLQTKTVVTPLYNTPWL 502
>dbj|BAA96794.1| cytosolic aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)] gi|14164407|dbj|BAB55806.1| cytosolic
aldehyde dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 502
Score = 176 bits (446), Expect = 2e-43
Identities = 80/110 (72%), Positives = 96/110 (86%)
Frame = -1
Query: 536 DMLIVQDEIFGPVMALKKFKTVEEAIKSANHTRYGLAAGIMTKNLDIANTVSRSIRAGSV 357
+M I Q+EIFGPVMAL KFKTVEEAI+ AN TRYGLAAGI+TKN+D+ANTVSRSIRAG++
Sbjct: 393 EMSIAQEEIFGPVMALMKFKTVEEAIQKANSTRYGLAAGIVTKNIDVANTVSRSIRAGAI 452
Query: 356 WINCYFALDHDIPFGGYKASGFGKDYGLEALHQYLPVKSVVTPIYHSPWL 207
WINCY D D+PFGGYK SGFGKD G++AL +YL K+VVTP+Y++PWL
Sbjct: 453 WINCYLGFDPDVPFGGYKMSGFGKDMGMDALEKYLHTKAVVTPLYNTPWL 502
>gb|AAL99611.1|AF348415_1 cytosolic aldehyde dehydrogenase RF2D [Zea mays]
Length = 511
Score = 163 bits (413), Expect = 1e-39
Identities = 76/109 (69%), Positives = 91/109 (82%)
Frame = -1
Query: 536 DMLIVQDEIFGPVMALKKFKTVEEAIKSANHTRYGLAAGIMTKNLDIANTVSRSIRAGSV 357
DM I Q+EIFGPVM+L KFKTV+E I+ AN TRYGLAAGI+TK+LD+AN VSRS+RAG+V
Sbjct: 402 DMKIAQEEIFGPVMSLMKFKTVDEVIEKANCTRYGLAAGIVTKSLDVANRVSRSVRAGTV 461
Query: 356 WINCYFALDHDIPFGGYKASGFGKDYGLEALHQYLPVKSVVTPIYHSPW 210
W+NCYFA D D PFGGYK SGFG+D GL A+ +YL VKSV+T + SPW
Sbjct: 462 WVNCYFAFDPDAPFGGYKMSGFGRDQGLAAMDKYLQVKSVITALPDSPW 510
>gb|AAL99610.1|AF348414_1 cytosolic aldehyde dehydrogenase RF2D [Zea mays]
Length = 466
Score = 163 bits (413), Expect = 1e-39
Identities = 76/109 (69%), Positives = 91/109 (82%)
Frame = -1
Query: 536 DMLIVQDEIFGPVMALKKFKTVEEAIKSANHTRYGLAAGIMTKNLDIANTVSRSIRAGSV 357
DM I Q+EIFGPVM+L KFKTV+E I+ AN TRYGLAAGI+TK+LD+AN VSRS+RAG+V
Sbjct: 357 DMKIAQEEIFGPVMSLMKFKTVDEVIEKANCTRYGLAAGIVTKSLDVANRVSRSVRAGTV 416
Query: 356 WINCYFALDHDIPFGGYKASGFGKDYGLEALHQYLPVKSVVTPIYHSPW 210
W+NCYFA D D PFGGYK SGFG+D GL A+ +YL VKSV+T + SPW
Sbjct: 417 WVNCYFAFDPDAPFGGYKMSGFGRDQGLAAMDKYLQVKSVITALPDSPW 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,621,884
Number of Sequences: 1393205
Number of extensions: 13610847
Number of successful extensions: 36679
Number of sequences better than 10.0: 1337
Number of HSP's better than 10.0 without gapping: 34713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36323
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
