Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002543A_C01 KMC002543A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_615320.1| predicted protein [Methanosarcina acetivorans s... 33 2.1
dbj|BAC04594.1| unnamed protein product [Homo sapiens] 33 2.1
emb|CAA81513.1| unknown [Saccharomyces cerevisiae] gi|1582532|pr... 32 2.8
dbj|BAC05810.1| seven transmembrane helix receptor [Homo sapiens] 32 3.6
ref|NP_603467.1| unknown [Fusobacterium nucleatum subsp. nucleat... 32 4.8
>ref|NP_615320.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19914124|gb|AAM03800.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 143
Score = 32.7 bits (73), Expect = 2.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 390 SIVVMCPLPGMCLLILKLFILVFCTHSALFFNYKIFCFEVHIIKSTLLLCSC 235
S V++C + +IL +F L S F N FC ++ ++ T ++CSC
Sbjct: 62 SFVIVCEI--RYKIILAVFFLFPGFESEFFRNSTYFCLDMKVLSITFIICSC 111
>dbj|BAC04594.1| unnamed protein product [Homo sapiens]
Length = 134
Score = 32.7 bits (73), Expect = 2.1
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -3
Query: 410 CLKCC*LALLSCAHCQVCVYLS*SFSFLCFALIQLSFLTIKFSVSRCTS*RVLCCFALVC 231
C+ C + + C + ++CV F+C + F+ + V +C F VC
Sbjct: 24 CVPVC-MCVYVCVYVRICVICVCVCVFVCAHMCSCVFVYVCICVCL-----YVCVFVCVC 77
Query: 230 LFTSSRLFLHYRLLPCRCFCL-LGLCFG*ALVLT 132
++ +F+ L C C C+ + +C LVLT
Sbjct: 78 MYVYLCVFVCMCLCVCICVCVCVCVCVSSHLVLT 111
>emb|CAA81513.1| unknown [Saccharomyces cerevisiae] gi|1582532|prf||2118403F ORF
Length = 108
Score = 32.3 bits (72), Expect = 2.8
Identities = 16/45 (35%), Positives = 28/45 (61%)
Frame = -1
Query: 451 LHLLYLILIMLKFTVSNVAN*HCCHVPIARYVFTYLKAFHSCVLH 317
+HL YL+LI+ V + + H CH+ I++++ ++KAF LH
Sbjct: 1 MHLKYLLLILSVLCVLHEPDRHICHL-ISQFLRPHMKAFRHLHLH 44
>dbj|BAC05810.1| seven transmembrane helix receptor [Homo sapiens]
Length = 346
Score = 32.0 bits (71), Expect = 3.6
Identities = 22/80 (27%), Positives = 37/80 (45%), Gaps = 5/80 (6%)
Frame = -3
Query: 392 LALLSCAHCQVCVYLS*SFSFLCFALIQLSFLTIKFSVSRCTS*RVLCCFAL-----VCL 228
+++ C + +CV +S S LC ++ L + VS C S RV C L VC+
Sbjct: 113 ISVYLCVYVCICVCVSVS---LCVSVCACLSLCVCIRVSVCLSLRVCVCVCLCVSVYVCV 169
Query: 227 FTSSRLFLHYRLLPCRCFCL 168
+ ++L + C C C+
Sbjct: 170 SSYLCVYLCVCMYVCECVCV 189
>ref|NP_603467.1| unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|19714071|gb|AAL94766.1| unknown [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 163
Score = 31.6 bits (70), Expect = 4.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 306 LFFNYKIFCFEVHIIKSTLLLCSCLPFHFK*IIFAL 199
LFFNY +FC +HII P HF +IF+L
Sbjct: 63 LFFNYIVFCITIHII------AFYYPRHFHKLIFSL 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,130,804
Number of Sequences: 1393205
Number of extensions: 6979010
Number of successful extensions: 16682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16414
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
