Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002539A_C01 KMC002539A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO65974.1| putative vacuolar ATPase subunit H protein [Suaed... 182 2e-45
emb|CAD27445.1| putative vacuolar ATPase subunit H [Mesembryanth... 177 1e-43
gb|AAK59761.1| AT3g42050/F4M19_10 [Arabidopsis thaliana] 173 2e-42
ref|NP_189791.1| vacuolar H(+)-ATPase subunit-like protein; prot... 173 2e-42
dbj|BAC57732.1| putative vacuolar ATP synthase subunit H [Oryza ... 168 6e-41
>gb|AAO65974.1| putative vacuolar ATPase subunit H protein [Suaeda maritima subsp.
salsa]
Length = 465
Score = 182 bits (463), Expect = 2e-45
Identities = 89/100 (89%), Positives = 95/100 (95%)
Frame = -2
Query: 635 DSIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRFIVTDL 456
D+ FWRENI NFEENDFQILRVLITILDTS+DPR+LAVACFDLSQFVQ HP+GR IV DL
Sbjct: 366 DAFFWRENIKNFEENDFQILRVLITILDTSNDPRSLAVACFDLSQFVQQHPSGRIIVNDL 425
Query: 455 KAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 336
+AKERVMKLMNHENAEVTKNALLCIQRLFLG+KYASFLQA
Sbjct: 426 QAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 465
>emb|CAD27445.1| putative vacuolar ATPase subunit H [Mesembryanthemum crystallinum]
Length = 470
Score = 177 bits (448), Expect = 1e-43
Identities = 90/102 (88%), Positives = 96/102 (93%), Gaps = 2/102 (1%)
Frame = -2
Query: 635 DSIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVA-C-FDLSQFVQHHPAGRFIVT 462
D+ FWR+NITNFEENDFQILRVLITILDTSSDPR+LAV C FDLSQF+Q+HPAGR IV
Sbjct: 369 DTFFWRDNITNFEENDFQILRVLITILDTSSDPRSLAVCKCEFDLSQFIQNHPAGRMIVN 428
Query: 461 DLKAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 336
DLKAKERVMKLMNHENAEVTKNALLCIQRLFLG+KYASFLQA
Sbjct: 429 DLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA 470
>gb|AAK59761.1| AT3g42050/F4M19_10 [Arabidopsis thaliana]
Length = 441
Score = 173 bits (438), Expect = 2e-42
Identities = 83/97 (85%), Positives = 92/97 (94%)
Frame = -2
Query: 626 FWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRFIVTDLKAK 447
FWREN+T FEENDFQILRVL+TILDTSSDPR+LAVACFD+SQF+Q+H AGR IV DLKAK
Sbjct: 345 FWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAK 404
Query: 446 ERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 336
ERVMKL+NHENAEVTKNA+LCIQRL LG+KYASFLQA
Sbjct: 405 ERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441
>ref|NP_189791.1| vacuolar H(+)-ATPase subunit-like protein; protein id: At3g42050.1,
supported by cDNA: gi_14334993, supported by cDNA:
gi_20147134 [Arabidopsis thaliana]
gi|12585473|sp|Q9LX65|VATH_ARATH Probable vacuolar ATP
synthase subunit H (V-ATPase H subunit) (Vacuolar proton
pump H subunit) (Vacuolar proton pump subunit SFD)
gi|11358916|pir||T48960 vacuolar H(+)-ATPase
subunit-like protein - Arabidopsis thaliana
gi|7801655|emb|CAB91576.1| vacuolar H(+)-ATPase
subunit-like protein [Arabidopsis thaliana]
gi|20147135|gb|AAM10284.1| AT3g42050/F4M19_10
[Arabidopsis thaliana]
Length = 441
Score = 173 bits (438), Expect = 2e-42
Identities = 83/97 (85%), Positives = 92/97 (94%)
Frame = -2
Query: 626 FWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRFIVTDLKAK 447
FWREN+T FEENDFQILRVL+TILDTSSDPR+LAVACFD+SQF+Q+H AGR IV DLKAK
Sbjct: 345 FWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAK 404
Query: 446 ERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 336
ERVMKL+NHENAEVTKNA+LCIQRL LG+KYASFLQA
Sbjct: 405 ERVMKLINHENAEVTKNAILCIQRLLLGAKYASFLQA 441
>dbj|BAC57732.1| putative vacuolar ATP synthase subunit H [Oryza sativa (japonica
cultivar-group)]
Length = 452
Score = 168 bits (425), Expect = 6e-41
Identities = 79/99 (79%), Positives = 90/99 (90%)
Frame = -2
Query: 635 DSIFWRENITNFEENDFQILRVLITILDTSSDPRTLAVACFDLSQFVQHHPAGRFIVTDL 456
D FWRENI NFEENDFQILRVL+TI+DTS+D LAVAC+DLSQF+Q+HP+GR +V DL
Sbjct: 353 DPSFWRENINNFEENDFQILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADL 412
Query: 455 KAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQ 339
KAK+RVMKLMNHENAEV KNALLC+QRLFLG+KYASFLQ
Sbjct: 413 KAKDRVMKLMNHENAEVRKNALLCVQRLFLGAKYASFLQ 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,982,382
Number of Sequences: 1393205
Number of extensions: 8807384
Number of successful extensions: 20297
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 19772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20289
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
