Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002524A_C01 KMC002524A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196538.1| pectin methylesterase - like protein; protein i... 175 3e-43
dbj|BAB09534.1| pectin methylesterase-like protein [Arabidopsis ... 175 3e-43
emb|CAA69348.1| pectin methylesterase [Silene latifolia subsp. a... 173 1e-42
ref|NP_568991.2| pectinesterase family; protein id: At5g64640.1 ... 162 3e-39
gb|AAM91523.1| pectin methylesterase-like protein [Arabidopsis t... 162 3e-39
>ref|NP_196538.1| pectin methylesterase - like protein; protein id: At5g09760.1,
supported by cDNA: gi_17979182 [Arabidopsis thaliana]
gi|11279195|pir||T49922 pectin methylesterase-like
protein - Arabidopsis thaliana
gi|7671413|emb|CAB89354.1| pectin methylesterase-like
protein [Arabidopsis thaliana]
gi|17979183|gb|AAL49830.1| putative pectin
methylesterase [Arabidopsis thaliana]
Length = 551
Score = 175 bits (444), Expect = 3e-43
Identities = 77/109 (70%), Positives = 91/109 (82%)
Frame = -3
Query: 529 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 350
CLINGTE+YM L+ +NPKVHKN+LGRPWK+YSRTVFI LEAL+TP GW+PW+G+FALK
Sbjct: 442 CLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALK 501
Query: 349 TLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDWIPSS 203
TLYYGE +N+GPGSD S RVSWSS++P EHV YS NFIQ D+W S
Sbjct: 502 TLYYGESKNTGPGSDRSQRVSWSSQIPDEHVHVYSVANFIQADEWASMS 550
>dbj|BAB09534.1| pectin methylesterase-like protein [Arabidopsis thaliana]
Length = 577
Score = 175 bits (444), Expect = 3e-43
Identities = 77/109 (70%), Positives = 91/109 (82%)
Frame = -3
Query: 529 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 350
CLINGTE+YM L+ +NPKVHKN+LGRPWK+YSRTVFI LEAL+TP GW+PW+G+FALK
Sbjct: 468 CLINGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALK 527
Query: 349 TLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDWIPSS 203
TLYYGE +N+GPGSD S RVSWSS++P EHV YS NFIQ D+W S
Sbjct: 528 TLYYGESKNTGPGSDRSQRVSWSSQIPDEHVHVYSVANFIQADEWASMS 576
>emb|CAA69348.1| pectin methylesterase [Silene latifolia subsp. alba]
Length = 379
Score = 173 bits (439), Expect = 1e-42
Identities = 73/109 (66%), Positives = 90/109 (81%)
Frame = -3
Query: 529 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 350
CLINGT+DYM LYHS P HKNYLGRPWK YSRTV+I+ +E+L+ P+GW+PW+G+FAL
Sbjct: 270 CLINGTDDYMKLYHSKPSKHKNYLGRPWKMYSRTVYINCTMESLIAPEGWLPWSGDFALS 329
Query: 349 TLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDWIPSS 203
TLYYGEF NSGPG+++S RV WS VP EHV TY ENF+QGD+WI ++
Sbjct: 330 TLYYGEFGNSGPGANVSSRVPWSRLVPEEHVSTYYVENFLQGDEWITTA 378
>ref|NP_568991.2| pectinesterase family; protein id: At5g64640.1 [Arabidopsis
thaliana] gi|10178067|dbj|BAB11431.1| pectin
methylesterase-like protein [Arabidopsis thaliana]
Length = 602
Score = 162 bits (409), Expect = 3e-39
Identities = 68/105 (64%), Positives = 87/105 (82%)
Frame = -3
Query: 529 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 350
C INGTE+YM + +NP+ HKN+LGRPWKE+SRTVF++ LE+L++P GWMPWNG+FALK
Sbjct: 493 CSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALK 552
Query: 349 TLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDW 215
TLYYGE++N+GPGS S RV WSS++P +HV YS NFIQ D+W
Sbjct: 553 TLYYGEYKNTGPGSVRSSRVPWSSEIPEKHVDVYSVANFIQADEW 597
>gb|AAM91523.1| pectin methylesterase-like protein [Arabidopsis thaliana]
Length = 409
Score = 162 bits (409), Expect = 3e-39
Identities = 68/105 (64%), Positives = 87/105 (82%)
Frame = -3
Query: 529 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 350
C INGTE+YM + +NP+ HKN+LGRPWKE+SRTVF++ LE+L++P GWMPWNG+FALK
Sbjct: 300 CSINGTEEYMKEFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALK 359
Query: 349 TLYYGEFENSGPGSDLSLRVSWSSKVPAEHVLTYSAENFIQGDDW 215
TLYYGE++N+GPGS S RV WSS++P +HV YS NFIQ D+W
Sbjct: 360 TLYYGEYKNTGPGSVRSSRVPWSSEIPEKHVDVYSVANFIQADEW 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,302,582
Number of Sequences: 1393205
Number of extensions: 10792555
Number of successful extensions: 27952
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 26646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27856
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
