Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002522A_C01 KMC002522A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09602 probable zinc finger protein SCOF-1, cold-inducible ... 106 1e-22
dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida] 75 6e-13
gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata] 69 2e-11
emb|CAB77055.1| putative TFIIIA (or kruppel)-like zinc finger pr... 61 8e-09
ref|NP_174094.1| salt-tolerance zinc finger protein; protein id:... 52 5e-06
>pir||T09602 probable zinc finger protein SCOF-1, cold-inducible - soybean
gi|1763063|gb|AAB39638.1| SCOF-1 [Glycine max]
Length = 240
Score = 106 bits (265), Expect = 1e-22
Identities = 53/62 (85%), Positives = 56/62 (89%)
Frame = -1
Query: 495 ASEGVGSTHTVSHSHHRDFDLNIPALPEFPSTKAGEDEVESPHPVMKKKQRVFMIPKIEI 316
ASEGVGSTHTVSH HHRDFDLNIPA P+F STK GEDEVESPHPVM KK R+F+IPKIEI
Sbjct: 179 ASEGVGSTHTVSHGHHRDFDLNIPAFPDF-STKVGEDEVESPHPVM-KKPRLFVIPKIEI 236
Query: 315 PQ 310
PQ
Sbjct: 237 PQ 238
>dbj|BAA05079.1| zinc-finger protein [Petunia x hybrida]
Length = 253
Score = 74.7 bits (182), Expect = 6e-13
Identities = 41/62 (66%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Frame = -1
Query: 498 TASEGVGSTHTVSHSHHRDFDLNIPALPEF-PSTKAGEDEVESPHPVMKKKQRVFMIPKI 322
T+SEGVGST SHHRDFDLNIPALPEF P +GEDEVESPHP KK R+ + PK+
Sbjct: 194 TSSEGVGSTI----SHHRDFDLNIPALPEFWPGFGSGEDEVESPHPA--KKSRLSLPPKL 247
Query: 321 EI 316
E+
Sbjct: 248 EL 249
>gb|AAD26942.1|AF119050_1 zinc-finger protein 1 [Datisca glomerata]
Length = 247
Score = 69.3 bits (168), Expect = 2e-11
Identities = 38/52 (73%), Positives = 41/52 (78%), Gaps = 2/52 (3%)
Frame = -1
Query: 483 VGSTHTVSHSHHRDFDLNIPALPEFPST--KAGEDEVESPHPVMKKKQRVFM 334
VGSTHTVSHSH RDFDLNIPALPEF S +G+DEVESPHP KK R+ M
Sbjct: 198 VGSTHTVSHSH-RDFDLNIPALPEFRSNFFISGDDEVESPHPA--KKPRILM 246
>emb|CAB77055.1| putative TFIIIA (or kruppel)-like zinc finger protein [Medicago
sativa]
Length = 235
Score = 60.8 bits (146), Expect = 8e-09
Identities = 34/64 (53%), Positives = 41/64 (63%)
Frame = -1
Query: 504 SATASEGVGSTHTVSHSHHRDFDLNIPALPEFPSTKAGEDEVESPHPVMKKKQRVFMIPK 325
+ TASEGVG +SHSHHRDFDLN+PA P+F +DEV SP P KK + K
Sbjct: 177 AVTASEGVG----LSHSHHRDFDLNLPAFPDFSKKFFVDDEVFSPLPAAKKP----CLFK 228
Query: 324 IEIP 313
+EIP
Sbjct: 229 LEIP 232
>ref|NP_174094.1| salt-tolerance zinc finger protein; protein id: At1g27730.1,
supported by cDNA: gi_14334649, supported by cDNA:
gi_17104582, supported by cDNA: gi_9965730 [Arabidopsis
thaliana] gi|1565227|emb|CAA64820.1| salt-tolerance zinc
finger protein [Arabidopsis thaliana]
gi|9965731|gb|AAG10142.1|AF250336_1 zinc finger protein
STZ/ZAT10 [Arabidopsis thaliana]
gi|14334650|gb|AAK59503.1| putative salt-tolerance zinc
finger protein [Arabidopsis thaliana]
gi|17104583|gb|AAL34180.1| putative salt-tolerance zinc
finger protein [Arabidopsis thaliana]
Length = 227
Score = 51.6 bits (122), Expect = 5e-06
Identities = 30/52 (57%), Positives = 34/52 (64%)
Frame = -1
Query: 504 SATASEGVGSTHTVSHSHHRDFDLNIPALPEFPSTKAGEDEVESPHPVMKKK 349
S + SEG GST VS SH R FDLNIP +PEF S G+DEV SP P K +
Sbjct: 169 SVSNSEGAGSTSHVSSSH-RGFDLNIPPIPEF-SMVNGDDEVMSPMPAKKPR 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,458,794
Number of Sequences: 1393205
Number of extensions: 9775800
Number of successful extensions: 27784
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 26250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27726
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
