Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002521A_C02 KMC002521A_c02
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568755.1| putative protein; protein id: At5g51190.1, supp... 58 7e-08
pir||E71444 probable EREBP-4 - Arabidopsis thaliana gi|2245108|e... 50 1e-07
gb|AAM64362.1| contains similarity to ethylene responsive elemen... 57 1e-07
ref|NP_200968.1| DNA binding protein - like; protein id: At5g616... 54 1e-06
gb|AAG49031.1| ripening regulated protein DDTFR10/A [Lycopersico... 54 2e-06
>ref|NP_568755.1| putative protein; protein id: At5g51190.1, supported by cDNA:
2347., supported by cDNA: gi_18252238 [Arabidopsis
thaliana] gi|18252239|gb|AAL61952.1| putative protein
[Arabidopsis thaliana] gi|21387011|gb|AAM47909.1|
putative protein [Arabidopsis thaliana]
Length = 221
Score = 58.2 bits (139), Expect = 7e-08
Identities = 42/116 (36%), Positives = 53/116 (45%)
Frame = -1
Query: 555 YDRAAFTFRGSKAVLNFPLEAGVVDRKHSPEEEAEERGEEAKAGGIRRLLTVYRDTLFTP 376
YD+AAF RGSKA+LNFPLEAG KH E+ G+ K ++ R T
Sbjct: 112 YDKAAFKLRGSKAILNFPLEAG----KH------EDLGDNKKTISLK----AKRKRQVTE 157
Query: 375 PSSSGDVKGLFTVESDINRIKETPLTPSSWTGFWDNFTVAPSLAVISPPSFGICRS 208
S + E + PLTPSSW GFWD + + + S P C S
Sbjct: 158 DESQLISRKAVKREEAQVQADACPLTPSSWKGFWDG-ADSKDMGIFSVPLLSPCPS 212
>pir||E71444 probable EREBP-4 - Arabidopsis thaliana gi|2245108|emb|CAB10530.1|
EREBP-4 like protein [Arabidopsis thaliana]
gi|7268501|emb|CAB78752.1| EREBP-4 like protein
[Arabidopsis thaliana]
Length = 603
Score = 50.4 bits (119), Expect(2) = 1e-07
Identities = 40/109 (36%), Positives = 51/109 (46%)
Frame = -1
Query: 558 AYDRAAFTFRGSKAVLNFPLEAGVVDRKHSPEEEAEERGEEAKAGGIRRLLTVYRDTLFT 379
AYD+ AF RGSKA+LNFPLE VD+ + E+ + K G +TV L T
Sbjct: 176 AYDKEAFRLRGSKAILNFPLE---VDKWNPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKT 232
Query: 378 PPSSSGDVKGLFTVESDINRIKETPLTPSSWTGFWDNFTVAPSLAVISP 232
S DV G VES + I + LT F P L+ +SP
Sbjct: 233 --EESYDVSGGENVESGLTAIDDWDLT---------EFLSMPLLSPLSP 270
Score = 26.9 bits (58), Expect(2) = 1e-07
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = -2
Query: 254 LRSPLSPHPALGFAAANGCVKLQIVILFIKLNCKLQFNFVYQT*ISLFIFL 102
L SPLSPHP L +A C + ++ + K +F+ I L IFL
Sbjct: 264 LLSPLSPHPPLLYADVELC--YIFCLFYVHIRAKFIHSFICFL-IQLLIFL 311
>gb|AAM64362.1| contains similarity to ethylene responsive element binding factor
[Arabidopsis thaliana]
Length = 221
Score = 57.4 bits (137), Expect = 1e-07
Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = -1
Query: 555 YDRAAFTFRGSKAVLNFPLEAGVVDRKHSPEEEAEERGEEAKAGGI--RRLLTVYRDTLF 382
YD+AAF RGSKA+LNFPLEAG KH E+ G+ K + +R V D
Sbjct: 112 YDKAAFKLRGSKAILNFPLEAG----KH------EDLGDNKKTISLKAKRKRQVTED--- 158
Query: 381 TPPSSSGDVKGLFTVESDINRIKETPLTPSSWTGFWDNFTVAPSLAVISPPSFGICRS 208
S K + E+ + + PLTPSSW GFWD + + + S P C S
Sbjct: 159 --ESQLISHKAVKREEAQV-QADACPLTPSSWKGFWDG-ADSKDMGIFSVPLLSPCPS 212
>ref|NP_200968.1| DNA binding protein - like; protein id: At5g61600.1, supported by
cDNA: 92102., supported by cDNA: gi_13430473, supported
by cDNA: gi_15809920 [Arabidopsis thaliana]
gi|9758475|dbj|BAB09004.1| contains similarity to
ethylene responsive element binding
factor~gene_id:K11J9.13 [Arabidopsis thaliana]
gi|15809921|gb|AAL06888.1| AT5g61600/k11j9_120
[Arabidopsis thaliana] gi|23297105|gb|AAN13094.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 241
Score = 53.9 bits (128), Expect = 1e-06
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Frame = -1
Query: 558 AYDRAAFTFRGSKAVLNFPLEAGVVDRKHSPE------EEAEERG---EEAKAGGIRRLL 406
AYD+AAF RG KA+LNFPL+ V S E + ++G EE KA ++
Sbjct: 127 AYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDKGSPPEEEKAARVK--- 183
Query: 405 TVYRDTLFTPPSSSGDVKGLFTVESDINRIKETPLTPSSWTGFWD 271
V + T ++ +V+ + PLTPSSW GFWD
Sbjct: 184 -VEEEESNTSETTEAEVEPV------------VPLTPSSWMGFWD 215
>gb|AAG49031.1| ripening regulated protein DDTFR10/A [Lycopersicon esculentum]
Length = 214
Score = 53.5 bits (127), Expect = 2e-06
Identities = 40/117 (34%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Frame = -1
Query: 558 AYDRAAFTFRGSKAVLNFPLE-AGVVDRKHSPEEEAEERGEEAKAGGIRRLLTVYRDTLF 382
AYDRAAF RGSKA+LNFPLE + H E+ + G R V R+
Sbjct: 99 AYDRAAFRLRGSKAILNFPLEVSNFKQENHEIEKNVVNLNSNTNSCGKR----VRRE--- 151
Query: 381 TPPSSSGDVKGLFTVESDINRIKETPLTPSSWTGFWD-----NFTVAPSLAVISPPS 226
D + E ++ TPLTPS+W+ WD P L+ +SP S
Sbjct: 152 ----MENDDGIVMKKEVKREQMVATPLTPSNWSSIWDCGNGKGIFEVPPLSPLSPHS 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,362,718
Number of Sequences: 1393205
Number of extensions: 10642278
Number of successful extensions: 37617
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 34705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37381
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
