Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002512A_C01 KMC002512A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565009.1| N-acetylglucosaminyltransferase family (Core-2/... 59 5e-08
dbj|BAB40033.1| P0445D12.4 [Oryza sativa (japonica cultivar-group)] 44 0.002
ref|NP_198815.1| N-acetylglucosaminyltransferase family (Core-2/... 37 0.15
ref|NP_174929.1| hypothetical protein; protein id: At1g40230.1 [... 33 2.1
ref|NP_197009.1| N-acetylglucosaminyltransferase family (Core-2/... 32 6.2
>ref|NP_565009.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At1g71070.1, supported by cDNA:
gi_15215743, supported by cDNA: gi_16323305 [Arabidopsis
thaliana] gi|25366909|pir||B96735 unknown protein
F23N20.6 [imported] - Arabidopsis thaliana
gi|12323435|gb|AAG51698.1|AC016972_17 unknown protein;
33908-32196 [Arabidopsis thaliana]
gi|15215744|gb|AAK91417.1| At1g71070/F23N20_6
[Arabidopsis thaliana] gi|16323306|gb|AAL15408.1|
At1g71070/F23N20_6 [Arabidopsis thaliana]
Length = 395
Score = 58.9 bits (141), Expect = 5e-08
Identities = 23/43 (53%), Positives = 34/43 (78%)
Frame = -3
Query: 598 WWVDPCSQSGDVNILKPGPQAKKHEGSVSSLPDDLGSQTHQCQ 470
WW DPCS+ +VNI+K GPQAKK + ++++ DDL SQ++QC+
Sbjct: 353 WWTDPCSEWDEVNIVKAGPQAKKLDETITNFLDDLNSQSNQCK 395
>dbj|BAB40033.1| P0445D12.4 [Oryza sativa (japonica cultivar-group)]
Length = 402
Score = 43.9 bits (102), Expect = 0.002
Identities = 17/43 (39%), Positives = 29/43 (66%)
Frame = -3
Query: 598 WWVDPCSQSGDVNILKPGPQAKKHEGSVSSLPDDLGSQTHQCQ 470
W+ DPCSQ +VNI++PGPQA+K ++ + ++ S + C+
Sbjct: 359 WFNDPCSQWSNVNIVRPGPQAEKFRKHMNQIIEESASGNNSCK 401
>ref|NP_198815.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At5g39990.1 [Arabidopsis thaliana]
gi|10176991|dbj|BAB10223.1| glycosylation enzyme-like
protein [Arabidopsis thaliana]
Length = 447
Score = 37.4 bits (85), Expect = 0.15
Identities = 15/40 (37%), Positives = 26/40 (64%)
Frame = -3
Query: 589 DPCSQSGDVNILKPGPQAKKHEGSVSSLPDDLGSQTHQCQ 470
DPC+ GD ++++PGP A++ E V+SL ++ QC+
Sbjct: 408 DPCAVIGDTDVIRPGPGARRLENLVTSLLSTENFRSKQCK 447
>ref|NP_174929.1| hypothetical protein; protein id: At1g40230.1 [Arabidopsis
thaliana] gi|22329983|ref|NP_683365.1| hypothetical
protein; protein id: At1g40088.1 [Arabidopsis thaliana]
Length = 303
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = +1
Query: 10 PPSSILFFIKREWTTDTHVHKRINFLLESSTISMVIQNIQH 132
PP+S LF KR T+ TH H R++ S TIS+ Q + H
Sbjct: 52 PPTSSLFLSKRS-TSKTHSHSRLSLDQTSLTISLPHQTLDH 91
>ref|NP_197009.1| N-acetylglucosaminyltransferase family (Core-2/I-Branching enzyme
family); protein id: At5g15050.1, supported by cDNA:
25053., supported by cDNA: gi_16209673 [Arabidopsis
thaliana] gi|11291967|pir||T51450 hypothetical protein
F2G14_170 - Arabidopsis thaliana
gi|9755672|emb|CAC01824.1| putative protein [Arabidopsis
thaliana] gi|16209674|gb|AAL14395.1| AT5g15050/F2G14_170
[Arabidopsis thaliana] gi|21554320|gb|AAM63425.1|
putative glycosylation enzyme [Arabidopsis thaliana]
gi|21700835|gb|AAM70541.1| AT5g15050/F2G14_170
[Arabidopsis thaliana]
Length = 434
Score = 32.0 bits (71), Expect = 6.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 589 DPCSQSGDVNILKPGPQAKKHEGSVSSLPDDLGSQTHQCQ 470
DPC+ GD +++KPG AK+ E ++ L + QC+
Sbjct: 395 DPCAVIGDTSVIKPGLGAKRIEKLITYLLSTENFRPRQCR 434
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,850,689
Number of Sequences: 1393205
Number of extensions: 12612697
Number of successful extensions: 26211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26205
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
