Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002506A_C01 KMC002506A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177431.1| unknown protein; protein id: At1g72880.1 [Arabi... 70 2e-11
pir||H96753 hypothetical protein F3N23.8 [imported] - Arabidopsi... 70 2e-11
ref|NP_457316.1| stationary-phase survival protein [Salmonella e... 35 0.59
gb|EAA33931.1| predicted protein [Neurospora crassa] 35 0.77
ref|NP_701944.1| hypothetical protein [Plasmodium falciparum 3D7... 35 1.0
>ref|NP_177431.1| unknown protein; protein id: At1g72880.1 [Arabidopsis thaliana]
Length = 385
Score = 70.5 bits (171), Expect = 2e-11
Identities = 33/56 (58%), Positives = 43/56 (75%)
Frame = -2
Query: 610 LEFLDKEQEETDDDLDYRALENGYVAVTPLSLSPHIETDIQMAASDWISAVLPGEQ 443
LEFL KEQE TD+DLD +ALE+G+V+VTP SL P +++ Q AAS+WIS L +Q
Sbjct: 330 LEFLAKEQEHTDEDLDVKALEDGFVSVTPFSLLPKTDSETQAAASEWISKALNSDQ 385
>pir||H96753 hypothetical protein F3N23.8 [imported] - Arabidopsis thaliana
gi|5903077|gb|AAD55635.1|AC008017_8 Unknown protein
[Arabidopsis thaliana]
Length = 359
Score = 70.5 bits (171), Expect = 2e-11
Identities = 33/56 (58%), Positives = 43/56 (75%)
Frame = -2
Query: 610 LEFLDKEQEETDDDLDYRALENGYVAVTPLSLSPHIETDIQMAASDWISAVLPGEQ 443
LEFL KEQE TD+DLD +ALE+G+V+VTP SL P +++ Q AAS+WIS L +Q
Sbjct: 304 LEFLAKEQEHTDEDLDVKALEDGFVSVTPFSLLPKTDSETQAAASEWISKALNSDQ 359
>ref|NP_457316.1| stationary-phase survival protein [Salmonella enterica subsp.
enterica serovar Typhi] gi|16766233|ref|NP_461848.1|
survival protein, protein damage control [Salmonella
typhimurium LT2] gi|29143183|ref|NP_806525.1| stationary
phase survival protein [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
gi|20140035|sp|Q8XFG4|SURE_SALTY Acid phosphatase surE
gi|25326568|pir||AB0856 stationary-phase survival
protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18) gi|16421476|gb|AAL21807.1|
survival protein, protein damage control [Salmonella
typhimurium LT2] gi|16504000|emb|CAD06033.1|
stationary-phase survival protein [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138816|gb|AAO70385.1| stationary phase survival
protein [Salmonella enterica subsp. enterica serovar
Typhi Ty2]
Length = 253
Score = 35.4 bits (80), Expect = 0.59
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -2
Query: 592 EQEETDDDLDYRALENGYVAVTPL--SLSPHIETDIQMAASDWISAVLPGEQ 443
++ + D D+ A++ GYV+VTPL L+ H D+ SDW+ +V G Q
Sbjct: 204 DKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDV---VSDWLDSVGVGTQ 252
>gb|EAA33931.1| predicted protein [Neurospora crassa]
Length = 793
Score = 35.0 bits (79), Expect = 0.77
Identities = 26/80 (32%), Positives = 36/80 (44%), Gaps = 7/80 (8%)
Frame = -2
Query: 610 LEFLDKEQEETDDDLDYRALENGYVAVTPLSLSPHIETDIQ-------MAASDWISAVLP 452
L+ L++ E+ D+DL Y+ L + LSPH D Q ++ DWI LP
Sbjct: 227 LQELERGLEDDDEDLMYKNLYRRLLRDPDKYLSPHKTLDKQITDLIMVLSRPDWIDFTLP 286
Query: 451 GEQ*IRSLA*LCTSEIYDNS 392
Q + T IYDNS
Sbjct: 287 KNQ-------VATKFIYDNS 299
>ref|NP_701944.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497119|gb|AAN36668.1|AE014816_53 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1105
Score = 34.7 bits (78), Expect = 1.0
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Frame = +3
Query: 90 NERENYNNSSSVLRVMDAISYY--KQTKWHFS---KTCPRNYKKHLLQSLPHQRNSNNEE 254
N R N+S ++++ I + K K F+ KT +N+ K H +N+NN
Sbjct: 216 NTRLIDKNASKKIKIVYVIEFLNIKIAKMFFTLINKTVFQNFLKDQNVKNTHDKNNNNNN 275
Query: 255 GNPKLKNVKPKRIKKNTN*K*TIEEVVCDYRVLLHLGFKGKRNEKK----ELS*ISDVHN 422
N KN KN N + + +R H + K+N+KK LS V N
Sbjct: 276 NNNNNKNNNNNNNNKNNNNNNNNDNIY--FRYFFHELCQTKKNDKKVILQNLSRSCHVEN 333
Query: 423 HAKLLIYCSPGS 458
KL + P +
Sbjct: 334 IQKLFKHIEPNA 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,649,111
Number of Sequences: 1393205
Number of extensions: 10111415
Number of successful extensions: 29682
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29610
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
