Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002500A_C01 KMC002500A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB62108.1| GDP-D-mannose pyrophosphorylase [Nicotiana tabacum] 207 8e-53
gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum tuberosum] 206 2e-52
emb|CAC35355.1| GDP-mannose pyrophosphorylase [Arabidopsis thali... 205 4e-52
ref|NP_181507.1| GDP-mannose pyrophosphorylase; protein id: At2... 205 4e-52
dbj|BAB64272.1| putative GDP-mannose pyrophosphorylase [Oryza sa... 197 1e-49
>dbj|BAB62108.1| GDP-D-mannose pyrophosphorylase [Nicotiana tabacum]
Length = 361
Score = 207 bits (527), Expect = 8e-53
Identities = 98/105 (93%), Positives = 103/105 (97%)
Frame = -2
Query: 596 VDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVG 417
VDE+AKIGEGCLIGPDVAIG GC++ESGVRLSRCT+MRGVRIKKHACISSSIIGWHSTVG
Sbjct: 257 VDESAKIGEGCLIGPDVAIGSGCVIESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
Query: 416 PWARVENMTILGEDVHVCDEIYSHGGVVLPHKEIKSSILKPEIVM 282
WARVENMTILGEDVHVCDEIYS+GGVVLPHKEIKSSILKPEIVM
Sbjct: 317 QWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 361
>gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum tuberosum]
Length = 361
Score = 206 bits (523), Expect = 2e-52
Identities = 97/105 (92%), Positives = 102/105 (96%)
Frame = -2
Query: 596 VDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVG 417
VDE+AKIGEGCLIGPDVAIG GC++ESGVRLSRCT+MRGVRIKKHACIS SIIGWHSTVG
Sbjct: 257 VDESAKIGEGCLIGPDVAIGSGCVIESGVRLSRCTVMRGVRIKKHACISGSIIGWHSTVG 316
Query: 416 PWARVENMTILGEDVHVCDEIYSHGGVVLPHKEIKSSILKPEIVM 282
WARVENMTILGEDVHVCDEIYS+GGVVLPHKEIKSSILKPEIVM
Sbjct: 317 QWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 361
>emb|CAC35355.1| GDP-mannose pyrophosphorylase [Arabidopsis thaliana]
Length = 361
Score = 205 bits (521), Expect = 4e-52
Identities = 98/105 (93%), Positives = 102/105 (96%)
Frame = -2
Query: 596 VDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVG 417
VDETA IGEGCLIGPDVAIGPGCIVESGVRLSRCT+MRGVRIKKHACISSSIIGWHSTVG
Sbjct: 257 VDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
Query: 416 PWARVENMTILGEDVHVCDEIYSHGGVVLPHKEIKSSILKPEIVM 282
WAR+ENMTILGEDVHV DEIYS+GGVVLPHKEIKS+ILKPEIVM
Sbjct: 317 QWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIVM 361
>ref|NP_181507.1| GDP-mannose pyrophosphorylase; protein id: At2g39770.1, supported
by cDNA: 37775., supported by cDNA: gi_13605662,
supported by cDNA: gi_15982867, supported by cDNA:
gi_16226304, supported by cDNA: gi_3598957, supported by
cDNA: gi_4151924 [Arabidopsis thaliana]
gi|7448154|pir||T01007 mannose-1-phosphate
guanylyltransferase (EC 2.7.7.13) - Arabidopsis thaliana
gi|2642159|gb|AAB87126.1| GDP-mannose pyrophosphorylase
[Arabidopsis thaliana] gi|3598958|gb|AAC78474.1|
GDP-mannose pyrophosphorylase [Arabidopsis thaliana]
gi|4151925|gb|AAD04627.1| CYT1 protein [Arabidopsis
thaliana] gi|13605663|gb|AAK32825.1|AF361812_1
At2g39770/T5I7.7 [Arabidopsis thaliana]
gi|15982868|gb|AAL09781.1| At2g39770/T5I7.7 [Arabidopsis
thaliana] gi|16226305|gb|AAL16129.1|AF428297_1
At2g39770/T5I7.7 [Arabidopsis thaliana]
gi|21593286|gb|AAM65235.1| GDP-mannose
pyrophosphorylase [Arabidopsis thaliana]
gi|22137256|gb|AAM91473.1| At2g39770/T5I7.7 [Arabidopsis
thaliana] gi|23397114|gb|AAN31841.1| putative
GDP-mannose pyrophosphorylase [Arabidopsis thaliana]
Length = 361
Score = 205 bits (521), Expect = 4e-52
Identities = 98/105 (93%), Positives = 102/105 (96%)
Frame = -2
Query: 596 VDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVG 417
VDETA IGEGCLIGPDVAIGPGCIVESGVRLSRCT+MRGVRIKKHACISSSIIGWHSTVG
Sbjct: 257 VDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 316
Query: 416 PWARVENMTILGEDVHVCDEIYSHGGVVLPHKEIKSSILKPEIVM 282
WAR+ENMTILGEDVHV DEIYS+GGVVLPHKEIKS+ILKPEIVM
Sbjct: 317 QWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEIVM 361
>dbj|BAB64272.1| putative GDP-mannose pyrophosphorylase [Oryza sativa (japonica
cultivar-group)] gi|20160631|dbj|BAB89577.1| putative
GDP-mannose pyrophosphorylase [Oryza sativa (japonica
cultivar-group)]
Length = 361
Score = 197 bits (500), Expect = 1e-49
Identities = 92/105 (87%), Positives = 100/105 (94%)
Frame = -2
Query: 596 VDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVG 417
V E+AKIGEGCLIGPDVAIGPGC+VE GVRLSRCT+MRGV IKKHACIS+SIIGWHSTVG
Sbjct: 257 VHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIKKHACISNSIIGWHSTVG 316
Query: 416 PWARVENMTILGEDVHVCDEIYSHGGVVLPHKEIKSSILKPEIVM 282
WAR+ENMTILGEDVHV DE+Y++GGVVLPHKEIKSSILKPEIVM
Sbjct: 317 QWARIENMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEIVM 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,815,261
Number of Sequences: 1393205
Number of extensions: 11671687
Number of successful extensions: 32096
Number of sequences better than 10.0: 227
Number of HSP's better than 10.0 without gapping: 29055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31712
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
