Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002499A_C01 KMC002499A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD23102.1| NADH dehydrogenase subunit F [Apium graveolens] 33 2.2
ref|NP_653760.1| hypothetical protein predicted by GeneMark [Bac... 33 2.2
ref|NP_593598.1| putative transmembrane protein; battenin family... 32 5.0
emb|CAB59322.1| NADH dehydrogenase subunit F [Morinda citrifolia] 32 8.5
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 32 8.5
>emb|CAD23102.1| NADH dehydrogenase subunit F [Apium graveolens]
Length = 717
Score = 33.5 bits (75), Expect = 2.2
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = -1
Query: 562 TYVMTSVFLIANAIPLFIIIFNILLCIS 479
T V +FL+A IPLFI+I +I+ CIS
Sbjct: 248 TMVAAGIFLVARLIPLFIVIPHIMNCIS 275
>ref|NP_653760.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 254
Score = 33.5 bits (75), Expect = 2.2
Identities = 26/66 (39%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Frame = -1
Query: 541 FLIANAIPLFIIIFNILLCISRFIICFV*SIFNSFYLSPSFNFLIFVK--GYSRSQFLKR 368
FL NA P FII+F ILL IS FI+ + Y S S + + V+ YS SQ +K
Sbjct: 145 FLDENANPSFIIVFFILLAIS-FIVMAI------LYFSYSMTYYVMVEKPEYSVSQAMKE 197
Query: 367 AMERME 350
+ M+
Sbjct: 198 SKNLMK 203
>ref|NP_593598.1| putative transmembrane protein; battenin family
[Schizosaccharomyces pombe] gi|11281661|pir||T50229
probable transmembrane protein [imported] - fission
yeast (Schizosaccharomyces pombe)
gi|6624605|emb|CAB63796.1| putative transmembrane
protein; battenin family [Schizosaccharomyces pombe]
Length = 396
Score = 32.3 bits (72), Expect = 5.0
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = -1
Query: 562 TYVMTSVFLIANAIPLFIIIFNILLCISRFIICFV*SIFNSFYLSPSFN---FLIFVKG 395
T VFL ++I F + + L I++FII + ++ YL+ S++ FLIFV+G
Sbjct: 272 TVYQIGVFLSRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYHFVLFLIFVEG 330
>emb|CAB59322.1| NADH dehydrogenase subunit F [Morinda citrifolia]
Length = 738
Score = 31.6 bits (70), Expect = 8.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 562 TYVMTSVFLIANAIPLFIIIFNILLCIS 479
T V +FL+A +PLFI+I I+ CIS
Sbjct: 268 TMVAXGIFLVARLLPLFIVIPYIMNCIS 295
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 31.6 bits (70), Expect = 8.5
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = -2
Query: 606 FMPWFTXIW*VILCAHMS*LQYF*LLMLSHYLSLYLIFCYVY 481
F+P F I + LC + + +F L + +L+L LI CY+Y
Sbjct: 59 FLPCFVSISSLQLCLILCYIYFFLALCVYFFLALCLILCYIY 100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,914,100
Number of Sequences: 1393205
Number of extensions: 8942521
Number of successful extensions: 22367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22358
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
