Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002495A_C01 KMC002495A_c01
(746 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D84806 hypothetical protein At2g38550 [imported] - Arabidop... 136 3e-31
gb|AAM63598.1| putative non-green plastid inner envelope membran... 136 3e-31
ref|NP_565892.1| putative non-green plastid inner envelope membr... 136 3e-31
pir||T14437 inner envelope membrane protein precursor, non-green... 129 4e-29
ref|NP_567046.1| expressed protein; protein id: At3g57280.1, sup... 65 1e-09
>pir||D84806 hypothetical protein At2g38550 [imported] - Arabidopsis thaliana
Length = 327
Score = 136 bits (343), Expect = 3e-31
Identities = 74/136 (54%), Positives = 99/136 (72%), Gaps = 6/136 (4%)
Frame = -1
Query: 737 TDDLSNISGVQDFYVGVPYGLVLSLGGFLLFMVTGSVAAIRFGVILGGVLLALSISSLKS 558
T+DL N+S DF+VG+PYGL+L +GGF+ FMV+GS+ AIRFGVILGG L ALS++SLKS
Sbjct: 185 TEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKS 244
Query: 557 YKRGKPSPLALKGQTAIAAILFLRELASIGKGSS----YFTALISGAAVAFYVYRIVLER 390
+++G+ S LKGQ AI AI+FLREL + S +FT L SG + FY+Y++V++R
Sbjct: 245 HRKGESSTKFLKGQMAIVAIIFLRELRLLLSQKSTFLGFFTTLTSGGVLGFYLYKMVVKR 304
Query: 389 NQQKGSNLE--GEAES 348
+KG LE GE ES
Sbjct: 305 --EKGPTLEDGGEDES 318
>gb|AAM63598.1| putative non-green plastid inner envelope membrane protein
[Arabidopsis thaliana]
Length = 334
Score = 136 bits (343), Expect = 3e-31
Identities = 74/136 (54%), Positives = 99/136 (72%), Gaps = 6/136 (4%)
Frame = -1
Query: 737 TDDLSNISGVQDFYVGVPYGLVLSLGGFLLFMVTGSVAAIRFGVILGGVLLALSISSLKS 558
T+DL N+S DF+VG+PYGL+L +GGF+ FMV+GS+ AIRFGVILGG L ALS++SLKS
Sbjct: 192 TEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKS 251
Query: 557 YKRGKPSPLALKGQTAIAAILFLRELASIGKGSS----YFTALISGAAVAFYVYRIVLER 390
+++G+ S LKGQ AI AI+FLREL + S +FT L SG + FY+Y++V++R
Sbjct: 252 HRKGESSTKFLKGQMAIVAIIFLRELRLLLSQKSTFLGFFTTLTSGGVLGFYLYKMVVKR 311
Query: 389 NQQKGSNLE--GEAES 348
+KG LE GE ES
Sbjct: 312 --EKGPTLEDGGEDES 325
>ref|NP_565892.1| putative non-green plastid inner envelope membrane protein; protein
id: At2g38550.1, supported by cDNA: 25626. [Arabidopsis
thaliana] gi|14334694|gb|AAK59525.1| putative non-green
plastid inner envelope membrane protein [Arabidopsis
thaliana] gi|20197395|gb|AAC67363.2| putative non-green
plastid inner envelope membrane protein [Arabidopsis
thaliana] gi|22136954|gb|AAM91706.1| putative non-green
plastid inner envelope membrane protein [Arabidopsis
thaliana]
Length = 335
Score = 136 bits (343), Expect = 3e-31
Identities = 74/136 (54%), Positives = 99/136 (72%), Gaps = 6/136 (4%)
Frame = -1
Query: 737 TDDLSNISGVQDFYVGVPYGLVLSLGGFLLFMVTGSVAAIRFGVILGGVLLALSISSLKS 558
T+DL N+S DF+VG+PYGL+L +GGF+ FMV+GS+ AIRFGVILGG L ALS++SLKS
Sbjct: 193 TEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGALFALSLASLKS 252
Query: 557 YKRGKPSPLALKGQTAIAAILFLRELASIGKGSS----YFTALISGAAVAFYVYRIVLER 390
+++G+ S LKGQ AI AI+FLREL + S +FT L SG + FY+Y++V++R
Sbjct: 253 HRKGESSTKFLKGQMAIVAIIFLRELRLLLSQKSTFLGFFTTLTSGGVLGFYLYKMVVKR 312
Query: 389 NQQKGSNLE--GEAES 348
+KG LE GE ES
Sbjct: 313 --EKGPTLEDGGEDES 326
>pir||T14437 inner envelope membrane protein precursor, non-green plastid - wild
cabbage gi|1143711|gb|AAA84891.1| non-green plastid
inner envelope membrane protein precursor
Length = 336
Score = 129 bits (324), Expect = 4e-29
Identities = 70/135 (51%), Positives = 93/135 (68%), Gaps = 4/135 (2%)
Frame = -1
Query: 743 SPTDDLSNISGVQDFYVGVPYGLVLSLGGFLLFMVTGSVAAIRFGVILGGVLLALSISSL 564
S T+DL ++S QDF+VG+PYGL+L +GGFL FM++GS+ AIRFGVILGG L ALS++SL
Sbjct: 191 SSTEDLRDVSRTQDFHVGIPYGLLLFVGGFLSFMISGSIPAIRFGVILGGALFALSMASL 250
Query: 563 KSYKRGKPSPLALKGQTAIAAILFLRELASI----GKGSSYFTALISGAAVAFYVYRIVL 396
K+ + G+ S LKGQ AI AI+FLREL + + T L SG +AFY Y++V
Sbjct: 251 KAQRLGESSAKFLKGQMAIVAIIFLRELKLVLFQRSTFMGFLTTLTSGGVLAFYGYKLV- 309
Query: 395 ERNQQKGSNLEGEAE 351
N++KG N E E
Sbjct: 310 -SNKEKGPNKEQGGE 323
>ref|NP_567046.1| expressed protein; protein id: At3g57280.1, supported by cDNA:
14487., supported by cDNA: gi_14517380, supported by
cDNA: gi_15450538 [Arabidopsis thaliana]
gi|14517381|gb|AAK62581.1| AT3g57280/F28O9_130
[Arabidopsis thaliana] gi|15450539|gb|AAK96447.1|
AT3g57280/F28O9_130 [Arabidopsis thaliana]
gi|21553454|gb|AAM62547.1| unknown [Arabidopsis
thaliana]
Length = 226
Score = 65.1 bits (157), Expect = 1e-09
Identities = 41/125 (32%), Positives = 64/125 (50%), Gaps = 4/125 (3%)
Frame = -1
Query: 710 VQDFYVGVPYGLVLSLGGFLLFMVTGSVAAIRFGVILGGVLLALSISSLKSYKRGKPSPL 531
+ DF G+PYG ++ GG L F + ++ ++ GV+ GG LLALS SLK ++ GK S
Sbjct: 100 IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYGGGLLALSTLSLKIWREGKSSFP 159
Query: 530 ALKGQTAIAAILFLRELASIGKGSSYFT----ALISGAAVAFYVYRIVLERNQQKGSNLE 363
+ GQ ++A++F + + F A+IS + FY Y +VL L+
Sbjct: 160 YILGQAVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSY-VVLSGGNPPPKKLK 218
Query: 362 GEAES 348
A S
Sbjct: 219 PSATS 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,920,325
Number of Sequences: 1393205
Number of extensions: 12952676
Number of successful extensions: 29567
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 28701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29553
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
