Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002489A_C01 KMC002489A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191083.1| disease resistance response protein-related; pr... 145 3e-34
ref|NP_181475.1| disease resistance response protein-related/ di... 142 2e-33
ref|NP_172252.1| resistance response protein-related; protein id... 98 4e-20
dbj|BAB64642.1| P0011G08.13 [Oryza sativa (japonica cultivar-gro... 94 6e-19
ref|NP_180435.1| fibroin-related; protein id: At2g28670.1 [Arabi... 91 5e-18
>ref|NP_191083.1| disease resistance response protein-related; protein id:
At3g55230.1 [Arabidopsis thaliana]
gi|11282368|pir||T47662 disease resistance response/
dirigent-like protein - Arabidopsis thaliana
gi|7019656|emb|CAB75757.1| disease resistance response/
dirigent-like protein [Arabidopsis thaliana]
Length = 306
Score = 145 bits (365), Expect = 3e-34
Identities = 70/106 (66%), Positives = 87/106 (82%), Gaps = 1/106 (0%)
Frame = -1
Query: 491 LDSAVVGRVQGFYLASSLDGTSQSVVLTILLHGGEHHDGVVDDSISLFGVHRTASPNSEV 312
L SA++GR QGFYLASSLDGTSQ++ LT+LLH H +DD+IS FGVHRTAS S +
Sbjct: 199 LGSAIIGRAQGFYLASSLDGTSQTLSLTVLLHEDHDHHDTLDDAISFFGVHRTASHASHI 258
Query: 311 AVIGGTGKYENARGYAALETL-LKEDQHTTDGVDTILHFNVYLTHY 177
AV+GGTG++E+A+GYA +ETL +EDQH TDG DTILHF+VYLT+Y
Sbjct: 259 AVVGGTGRFEHAKGYAVVETLHNQEDQHVTDGHDTILHFSVYLTYY 304
>ref|NP_181475.1| disease resistance response protein-related/ dirigent
protein-related; protein id: At2g39430.1 [Arabidopsis
thaliana] gi|7484920|pir||T00553 disease resistance
response protein homolog F12L6.9 - Arabidopsis thaliana
gi|3355472|gb|AAC27834.1| putative disease resistance
response protein [Arabidopsis thaliana]
Length = 322
Score = 142 bits (359), Expect = 2e-33
Identities = 71/105 (67%), Positives = 86/105 (81%), Gaps = 1/105 (0%)
Frame = -1
Query: 491 LDSAVVGRVQGFYLASSLDGTSQSVVLTILLHGGEHHDGVVDDSISLFGVHRTASPNSEV 312
L SAV+GR QGFYLASSLDGTSQ++ LT+LLHG +DD+IS FGVHRTAS S++
Sbjct: 216 LGSAVIGRAQGFYLASSLDGTSQTLSLTVLLHGEHDQHDTLDDAISFFGVHRTASHASQI 275
Query: 311 AVIGGTGKYENARGYAALETLLKED-QHTTDGVDTILHFNVYLTH 180
AVIGGTGK+E+A+GYA +ETL +D QH TDG DTILHF+VYLT+
Sbjct: 276 AVIGGTGKFEHAKGYAIVETLHNQDNQHITDGQDTILHFSVYLTY 320
>ref|NP_172252.1| resistance response protein-related; protein id: At1g07730.1
[Arabidopsis thaliana] gi|25407001|pir||F86212
hypothetical protein [imported] - Arabidopsis thaliana
gi|8439894|gb|AAF75080.1|AC007583_16 Contains similarity
to disease resistance response protein from Pisum
sativum gb|M18250. EST gb|F13940 comes from this gene.
[Arabidopsis thaliana]
Length = 389
Score = 98.2 bits (243), Expect = 4e-20
Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
Frame = -1
Query: 491 LDSAVVGRVQGFYLASSLDGTSQSVVLTILLHGGEHHDGVVDDSISLFGVHRTASPNSEV 312
L S ++G+ QGFY+AS+LDGTSQ++ T + G + +DSIS FGVHRTA+ S +
Sbjct: 284 LGSGLLGKAQGFYVASALDGTSQTMAFTAMFESGGY-----EDSISFFGVHRTAASESHL 338
Query: 311 AVIGGTGKYENARGYAALETLL-------KEDQHTTDGVDTILHFNVYLTH 180
V+GGTGKY NARG+A ++T ++ TDG++T+L VYL++
Sbjct: 339 GVMGGTGKYVNARGFAIVKTFTGSSGTQQQQPHQFTDGLETVLECTVYLSY 389
>dbj|BAB64642.1| P0011G08.13 [Oryza sativa (japonica cultivar-group)]
Length = 340
Score = 94.4 bits (233), Expect = 6e-19
Identities = 52/111 (46%), Positives = 67/111 (59%), Gaps = 6/111 (5%)
Frame = -1
Query: 491 LDSAVVGRVQGFYLASSLDGTSQSVVLTILLHGGEHHDGVVDDSISLFGVHRTASPNSEV 312
L S VGR QGFY+ASS +G SQ+VV+T + GE D SIS FGVHRTA S +
Sbjct: 235 LGSPAVGRAQGFYIASSEEGVSQTVVVTAMFKEGEFAD-----SISFFGVHRTADSESHL 289
Query: 311 AVIGGTGKYENARGYAALETL------LKEDQHTTDGVDTILHFNVYLTHY 177
AV+GGTGK+ +G+A + + +H TDGV+T+L F V L Y
Sbjct: 290 AVVGGTGKFAGVKGFAKVAVVRPGGVAATAAEHETDGVETVLQFTVLLIMY 340
>ref|NP_180435.1| fibroin-related; protein id: At2g28670.1 [Arabidopsis thaliana]
gi|25408006|pir||G84687 probable disease resistance
response protein [imported] - Arabidopsis thaliana
gi|4580390|gb|AAD24368.1| putative disease resistance
response protein [Arabidopsis thaliana]
gi|27754517|gb|AAO22706.1| putative fibroin protein
[Arabidopsis thaliana]
Length = 447
Score = 91.3 bits (225), Expect = 5e-18
Identities = 47/111 (42%), Positives = 70/111 (62%), Gaps = 7/111 (6%)
Frame = -1
Query: 491 LDSAVVGRVQGFYLASSLDGTSQSVVLTILLHGGEHHDGVVDDSISLFGVHRTASPNSEV 312
L S ++G+ QG+Y+AS++DGTSQ++ T + G + +DSIS FGV RTA S +
Sbjct: 342 LGSGLLGKAQGYYVASAIDGTSQTMAFTAMFESGGY-----EDSISFFGVLRTAVSESHI 396
Query: 311 AVIGGTGKYENARGYAALETLL-------KEDQHTTDGVDTILHFNVYLTH 180
V+GGTGKY NARG+A L+T + TDG++T++ VYL++
Sbjct: 397 GVMGGTGKYVNARGFAILKTFTGSSGTQQNQPHQFTDGLETVVECTVYLSY 447
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,133,251
Number of Sequences: 1393205
Number of extensions: 10132105
Number of successful extensions: 27382
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 26363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27304
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
