Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002485A_C01 KMC002485A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sat... 104 8e-22
ref|NP_180811.1| putative carboxymethylenebutenolidase; protein ... 98 5e-20
gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsi... 98 5e-20
ref|ZP_00091458.1| hypothetical protein [Azotobacter vinelandii] 40 0.017
ref|NP_708817.1| putative enzyme [Shigella flexneri 2a str. 301]... 37 0.19
>dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sativa (japonica
cultivar-group)]
Length = 281
Score = 104 bits (259), Expect = 8e-22
Identities = 55/95 (57%), Positives = 61/95 (63%)
Frame = -2
Query: 533 ELDDLVGFSDVTAAKKLEGKLKESRVPHEVHIYPGYRHAFMNGSSKRIKRWNGMGLPDED 354
ELD VGF+DVTAAK LE KLK S VPHEVHIYPG HAFMN S + +KR MGL
Sbjct: 200 ELDSFVGFADVTAAKSLEEKLKSSGVPHEVHIYPGCSHAFMNTSPEAVKRRKEMGL---- 255
Query: 353 EIAVQLARSRPDEDEIAVQLAWSRFETWMTRFLSS 249
DE++ A+ LAWSRF TWM RFL S
Sbjct: 256 ----------TDENQAAIDLAWSRFSTWMGRFLGS 280
>ref|NP_180811.1| putative carboxymethylenebutenolidase; protein id: At2g32520.1,
supported by cDNA: 2114. [Arabidopsis thaliana]
gi|7435073|pir||T02551 probable
carboxymethylenebutenolidase [imported] - Arabidopsis
thaliana gi|3298540|gb|AAC25934.1| putative
carboxymethylenebutenolidase [Arabidopsis thaliana]
Length = 239
Score = 98.2 bits (243), Expect = 5e-20
Identities = 52/94 (55%), Positives = 61/94 (64%)
Frame = -2
Query: 533 ELDDLVGFSDVTAAKKLEGKLKESRVPHEVHIYPGYRHAFMNGSSKRIKRWNGMGLPDED 354
ELD+ VGFSDVTAAK LE KLK S V HEVHIYPG HAF+N S + + R MGL D
Sbjct: 160 ELDNFVGFSDVTAAKNLEEKLKASGVAHEVHIYPGNGHAFLNRSPEGVSRRKSMGLSD-- 217
Query: 353 EIAVQLARSRPDEDEIAVQLAWSRFETWMTRFLS 252
EDE AV+LAWSRF +WM ++L+
Sbjct: 218 ------------EDEAAVELAWSRFTSWMKQYLA 239
>gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsis thaliana]
Length = 239
Score = 98.2 bits (243), Expect = 5e-20
Identities = 52/94 (55%), Positives = 61/94 (64%)
Frame = -2
Query: 533 ELDDLVGFSDVTAAKKLEGKLKESRVPHEVHIYPGYRHAFMNGSSKRIKRWNGMGLPDED 354
ELD+ VGFSDVTAAK LE KLK S V HEVHIYPG HAF+N S + + R MGL D
Sbjct: 160 ELDNFVGFSDVTAAKNLEEKLKASGVAHEVHIYPGNGHAFLNRSPEGVSRRKSMGLSD-- 217
Query: 353 EIAVQLARSRPDEDEIAVQLAWSRFETWMTRFLS 252
EDE AV+LAWSRF +WM ++L+
Sbjct: 218 ------------EDEAAVELAWSRFTSWMKQYLA 239
>ref|ZP_00091458.1| hypothetical protein [Azotobacter vinelandii]
Length = 295
Score = 40.0 bits (92), Expect = 0.017
Identities = 24/77 (31%), Positives = 31/77 (40%)
Frame = -2
Query: 482 EGKLKESRVPHEVHIYPGYRHAFMNGSSKRIKRWNGMGLPDEDEIAVQLARSRPDEDEIA 303
E LK + +E HIYPG +H F N S+ P DE A
Sbjct: 244 EAALKAAGKTYEAHIYPGTQHGFHNDST-------------------------PRYDEAA 278
Query: 302 VQLAWSRFETWMTRFLS 252
+LAW R W R+L+
Sbjct: 279 ARLAWDRTIAWFRRYLA 295
>ref|NP_708817.1| putative enzyme [Shigella flexneri 2a str. 301]
gi|24053465|gb|AAN44524.1|AE015317_2 putative enzyme
[Shigella flexneri 2a str. 301]
Length = 308
Score = 36.6 bits (83), Expect = 0.19
Identities = 22/77 (28%), Positives = 30/77 (38%)
Frame = -2
Query: 482 EGKLKESRVPHEVHIYPGYRHAFMNGSSKRIKRWNGMGLPDEDEIAVQLARSRPDEDEIA 303
E LK++ +E +IYPG H F N S+ P D+ A
Sbjct: 257 EAALKDNNKVYEAYIYPGVNHGFHNDST-------------------------PRYDKSA 291
Query: 302 VQLAWSRFETWMTRFLS 252
LAW R W ++LS
Sbjct: 292 ADLAWQRTLKWFDKYLS 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,340,178
Number of Sequences: 1393205
Number of extensions: 10371424
Number of successful extensions: 25216
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25178
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
