Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002482A_C01 KMC002482A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22612.1| cell cycle switch protein [Medicago sativa subsp.... 71 1e-11
gb|AAF37386.1|AF134835_1 WD-repeat cell cycle regulatory protein... 71 1e-11
ref|NP_194022.2| fizzy-related (FZR), putative; protein id: At4g... 70 2e-11
gb|AAM20437.1| putative fizzy-related protein [Arabidopsis thali... 70 2e-11
gb|AAL36231.1| putative Srw1 protein [Arabidopsis thaliana] gi|2... 65 5e-10
>gb|AAD22612.1| cell cycle switch protein [Medicago sativa subsp. x varia]
Length = 475
Score = 70.9 bits (172), Expect = 1e-11
Identities = 33/36 (91%), Positives = 34/36 (93%)
Frame = -3
Query: 551 GAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 444
GAGDETLRFWNVFPSPKSQNT+SEIGA SLGRT IR
Sbjct: 440 GAGDETLRFWNVFPSPKSQNTESEIGALSLGRTTIR 475
>gb|AAF37386.1|AF134835_1 WD-repeat cell cycle regulatory protein [Medicago truncatula]
Length = 475
Score = 70.9 bits (172), Expect = 1e-11
Identities = 33/36 (91%), Positives = 34/36 (93%)
Frame = -3
Query: 551 GAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 444
GAGDETLRFWNVFPSPKSQNT+SEIGA SLGRT IR
Sbjct: 440 GAGDETLRFWNVFPSPKSQNTESEIGALSLGRTTIR 475
>ref|NP_194022.2| fizzy-related (FZR), putative; protein id: At4g22910.1 [Arabidopsis
thaliana]
Length = 518
Score = 69.7 bits (169), Expect = 2e-11
Identities = 32/36 (88%), Positives = 33/36 (90%)
Frame = -3
Query: 551 GAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 444
GAGDETLRFWNVFPSPKSQNTDSEIG+S GRT IR
Sbjct: 483 GAGDETLRFWNVFPSPKSQNTDSEIGSSFFGRTTIR 518
>gb|AAM20437.1| putative fizzy-related protein [Arabidopsis thaliana]
gi|22136312|gb|AAM91234.1| putative fizzy-related
protein [Arabidopsis thaliana]
Length = 483
Score = 69.7 bits (169), Expect = 2e-11
Identities = 32/36 (88%), Positives = 33/36 (90%)
Frame = -3
Query: 551 GAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 444
GAGDETLRFWNVFPSPKSQNTDSEIG+S GRT IR
Sbjct: 448 GAGDETLRFWNVFPSPKSQNTDSEIGSSFFGRTTIR 483
>gb|AAL36231.1| putative Srw1 protein [Arabidopsis thaliana]
gi|20259635|gb|AAM14174.1| putative Srw1 protein
[Arabidopsis thaliana]
Length = 475
Score = 65.1 bits (157), Expect = 5e-10
Identities = 30/36 (83%), Positives = 32/36 (88%)
Frame = -3
Query: 551 GAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIR 444
GAGDETLRFWNVFPSPKSQ+ +SEIGA S GRT IR
Sbjct: 440 GAGDETLRFWNVFPSPKSQSRESEIGALSFGRTTIR 475
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,135,702
Number of Sequences: 1393205
Number of extensions: 10757329
Number of successful extensions: 23911
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 23099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23891
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
