Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002480A_C01 KMC002480A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_494905.1| Putative nuclear protein, with 2 coiled coil-4 ... 33 2.9
ref|NP_067383.1| usherin; putative extracellular matrix protein ... 33 3.8
sp|P37826|THB2_RAT Thyroid hormone receptor beta-2 32 6.5
gb|ZP_00010611.1| hypothetical protein [Rhodopseudomonas palustris] 32 6.5
>ref|NP_494905.1| Putative nuclear protein, with 2 coiled coil-4 domains, of
bilaterial origin [Caenorhabditis elegans]
gi|7511197|pir||T27901 hypothetical protein ZK546.13 -
Caenorhabditis elegans gi|868213|gb|AAA68747.1|
Hypothetical protein ZK546.13 [Caenorhabditis elegans]
Length = 603
Score = 33.1 bits (74), Expect = 2.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 583 VNETEVTEINAENSSRITRKILKHDEITYPQEWLQGCSSQPAP 455
+ E E+ +N+E ++ +I KH+ ++ P W G S+P P
Sbjct: 119 MKEAELRPVNSEMLIKLAHQISKHNSVSAPLTWQMGDPSRPFP 161
>ref|NP_067383.1| usherin; putative extracellular matrix protein MUSH2A [Mus
musculus] gi|7920157|gb|AAF70550.1|AF151717_1 putative
extracellular matrix protein MUSH2A [Mus musculus]
Length = 1461
Score = 32.7 bits (73), Expect = 3.8
Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Frame = +2
Query: 242 KCSYFPMYQKKSHKCSICICSQVKT-NYNIRC 334
K YF +YQ SH C C C ++ T N ++RC
Sbjct: 827 KAGYFNLYQNDSHLCLTCNCEKMGTVNGSLRC 858
>sp|P37826|THB2_RAT Thyroid hormone receptor beta-2
Length = 514
Score = 32.0 bits (71), Expect = 6.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 236 SHKCSYFPMYQKKSHKCSICICSQVKTNYNIRCLT 340
SHK Y P Y K C +C T Y+ RC+T
Sbjct: 144 SHKKGYIPSYLDKDELC--VVCGDKATGYHYRCIT 176
>gb|ZP_00010611.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 420
Score = 32.0 bits (71), Expect = 6.5
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = -1
Query: 445 SLPLVKNYSRISLWLKNLCIA*LKIVRIYRWHNKFGEASYVIVSLH 308
SL L+ R++ WL L R+YRWH+ G A+Y+ + LH
Sbjct: 54 SLLLMLREPRLAAWLGGL-------ERMYRWHHATGLAAYLFLLLH 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,379,937
Number of Sequences: 1393205
Number of extensions: 9136735
Number of successful extensions: 22242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22206
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
