Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002478A_C01 KMC002478A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK82443.1|AC091247_10 unknown protein [Oryza sativa] gi|1885... 43 0.003
pir||B86328 protein F18O14.29 [imported] - Arabidopsis thaliana ... 40 0.024
ref|NP_564090.1| expressed protein; protein id: At1g19530.1, sup... 40 0.024
gb|AAK82440.1|AC091247_7 unknown protein [Oryza sativa] gi|18855... 38 0.092
emb|CAC35329.1| N1-C protein [Linum usitatissimum] 32 3.9
>gb|AAK82443.1|AC091247_10 unknown protein [Oryza sativa]
gi|18855056|gb|AAL79748.1|AC096687_12 unknown protein
[Oryza sativa]
Length = 143
Score = 42.7 bits (99), Expect = 0.003
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -1
Query: 461 WTKSSWAFLNEPPVIEAA--TNKYTSQFHVANLGS 363
WT+S+WAFLNEPP E A Y QFHVA + +
Sbjct: 106 WTRSNWAFLNEPPQEEIAGKAQNYAPQFHVARIAT 140
>pir||B86328 protein F18O14.29 [imported] - Arabidopsis thaliana
gi|8778425|gb|AAF79433.1|AC025808_15 F18O14.29
[Arabidopsis thaliana]
Length = 115
Score = 39.7 bits (91), Expect = 0.024
Identities = 17/31 (54%), Positives = 20/31 (63%)
Frame = -1
Query: 461 WTKSSWAFLNEPPVIEAATNKYTSQFHVANL 369
W K+ WAFLNEP E N Y SQF VA++
Sbjct: 79 WRKTYWAFLNEPREEEGRPNNYVSQFKVAHI 109
>ref|NP_564090.1| expressed protein; protein id: At1g19530.1, supported by cDNA:
39579., supported by cDNA: gi_13877900, supported by
cDNA: gi_15810628 [Arabidopsis thaliana]
gi|13877901|gb|AAK44028.1|AF370213_1 unknown protein
[Arabidopsis thaliana] gi|15810629|gb|AAL07202.1|
unknown protein [Arabidopsis thaliana]
gi|21593498|gb|AAM65465.1| unknown [Arabidopsis
thaliana]
Length = 117
Score = 39.7 bits (91), Expect = 0.024
Identities = 17/31 (54%), Positives = 20/31 (63%)
Frame = -1
Query: 461 WTKSSWAFLNEPPVIEAATNKYTSQFHVANL 369
W K+ WAFLNEP E N Y SQF VA++
Sbjct: 81 WRKTYWAFLNEPREEEGRPNNYVSQFKVAHI 111
>gb|AAK82440.1|AC091247_7 unknown protein [Oryza sativa] gi|18855050|gb|AAL79742.1|AC096687_6
putative glycoprotein [Oryza sativa]
Length = 217
Score = 37.7 bits (86), Expect = 0.092
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = -1
Query: 524 SSAVDHVCEFNN*ILDMVECSWTKSSWAFLNEPPVIE----AATNKYTS-QFHVANL 369
S A DH + ++ EC WT+SSWAFLNE P E + Y QFHV+ +
Sbjct: 156 SFAADHDDDDDDVASTSSECWWTRSSWAFLNETPSPEQQMFGKSQTYACVQFHVSRV 212
>emb|CAC35329.1| N1-C protein [Linum usitatissimum]
Length = 1120
Score = 32.3 bits (72), Expect = 3.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 408 DKQVHITVSCCKLGILKIQPWIRWNQC 328
+KQ+ + ++C +G +KI+P + WN C
Sbjct: 457 EKQIFLDIACYFIGSVKIEPILMWNDC 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,387,973
Number of Sequences: 1393205
Number of extensions: 9541186
Number of successful extensions: 23473
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23467
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
